Basic Information | |
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Taxon OID | 3300011336 Open in IMG/M |
Scaffold ID | Ga0153703_1665 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 10899 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (45.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Hanam-si, Gyeonggi-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.5415972 | Long. (o) | 127.243111 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000957 | Metagenome / Metatranscriptome | 821 | Y |
F026860 | Metagenome | 196 | Y |
F042341 | Metagenome / Metatranscriptome | 158 | N |
F074557 | Metagenome / Metatranscriptome | 119 | Y |
F101160 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0153703_166512 | F026860 | N/A | MSKPSDIIARLMRELTASTEDNPPPAGFSTVDDIRAELRMAHTRNASSRAYDLFRRGLLERKAHQFKAKTGQCHKAYVYKPLPPYRSIREAAEGLFAHQADKVPKGWVRVVDYCLKARISDVALRGRITRANLKPKYYKTPRGIIGLHQNAYYWKPDLDRLFAKR* |
Ga0153703_166513 | F074557 | AGG | MTLVLALSAALLASEAVPEAVVQAVEQVESSGRGAKTPKGDNGKALGCLQWHSSAWANCSAIRRKAGLTVYPYADAAVPLRARDYARTWLTVLKVRLAAEIGRQPYPGEIWLAWNLGWSGFQRYGFNWAHVSRVKFDKARQVNTLAWGLPKRPAVSR* |
Ga0153703_166516 | F101160 | AGGAG | MTTPYNSHASAISAMNNLIDKHVPLREAALQEHYMKADETRALLKALGCWPTDKRKPPELRGKKPKTGKLASELGREAYHWARANKATYSEAAERFKVDANSIHSYRQYRKLPKLRTK* |
Ga0153703_166520 | F000957 | N/A | EIRTLQARVADQNDAIIRGTAITPDATPMSNFKHPDGMRALLSEVYEVNERIMTGDIVSPKAAIALTNMKKMLSHYYEALHEDGATKVSLQAYIAAGGWVGITYSYEMDGFEVAGSQVPRRV* |
Ga0153703_16654 | F042341 | AGGA | MSSPRPKSDPPAVQYGEPHFTFRVLGRVKPTHDPKCPTPFGYCWKGYGDIHVDPRQSEEELVDTVVHELLHDSLPYLDEEAVEKAANRIASAMWELGYRRTIIK* |
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