Scaffold Ga0153703_1443

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1443
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14188
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F007222	Metagenome / Metatranscriptome	355	Y
F012452	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_144317	F012452	GAG	MMGFLDNYEGNKERTDRWIATFPLGRLEAHIIEFNADKGYVLVQAKAWRNQEETEPAGIDYAYGYLAAYNANMKRWFIEDTVTSGLMRVMALVMGGAEKSTKETMQQVESMSTKVATADVAQEHDYWTTKFGDVPSYKTAEEAEQAGIPSLGSSMDEIAKQLGGQLIEAAPECAHGHMIWKQAKDGSPKNWGGYFCTERTKASQCVPRWYVLASDGKWKSQV*
Ga0153703_144318	F000403	N/A	VEVTGVIMADFMEIINPQTMTARMFIEGVVVEEYKVEQCDKCSQLRKFDKFGYQKGYDRTDNIIWFCGDCR*
Ga0153703_14438	F007222	GGAG	MVDKAGRGTYSITVDPYELKNLYSLLASFDKETQNEIRDKAQTMSKRLAGQLMMSGLSAPAPQTKLVVSTISTPRDRLIRVDIGGSKKVGRKYGGEKSKSGKGKVRQEGAPAGALLWGTEYGSHVGIDSIGRVYTNRFKAPYKKTGYWIAPAVDYYVPIVAREYASMIQGVANDLGFK*