Basic Information | |
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Taxon OID | 3300011336 Open in IMG/M |
Scaffold ID | Ga0153703_1443 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 14188 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (69.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Hanam-si, Gyeonggi-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.5415972 | Long. (o) | 127.243111 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000403 | Metagenome / Metatranscriptome | 1177 | Y |
F007222 | Metagenome / Metatranscriptome | 355 | Y |
F012452 | Metagenome | 280 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153703_144317 | F012452 | GAG | MMGFLDNYEGNKERTDRWIATFPLGRLEAHIIEFNADKGYVLVQAKAWRNQEETEPAGIDYAYGYLAAYNANMKRWFIEDTVTSGLMRVMALVMGGAEKSTKETMQQVESMSTKVATADVAQEHDYWTTKFGDVPSYKTAEEAEQAGIPSLGSSMDEIAKQLGGQLIEAAPECAHGHMIWKQAKDGSPKNWGGYFCTERTKASQCVPRWYVLASDGKWKSQV* |
Ga0153703_144318 | F000403 | N/A | VEVTGVIMADFMEIINPQTMTARMFIEGVVVEEYKVEQCDKCSQLRKFDKFGYQKGYDRTDNIIWFCGDCR* |
Ga0153703_14438 | F007222 | GGAG | MVDKAGRGTYSITVDPYELKNLYSLLASFDKETQNEIRDKAQTMSKRLAGQLMMSGLSAPAPQTKLVVSTISTPRDRLIRVDIGGSKKVGRKYGGEKSKSGKGKVRQEGAPAGALLWGTEYGSHVGIDSIGRVYTNRFKAPYKKTGYWIAPAVDYYVPIVAREYASMIQGVANDLGFK* |
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