Scaffold Ga0153703_1396

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1396
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15263
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F021293	Metagenome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_139618	F021293	GAG	MIQLHKWYPFVFPTPYDVRAITSETLAERLEYEYRQALKAEKLRQVVEAYDLELYNKRAYQTTVELEIFSNKRHFDKYA*
Ga0153703_139619	F000332	AGGCGG	VKWIVLILIIACLLVGAEAKVGCHVREFYGIAYTIHNPSERHQQMSMWLTNNVQFCKSQDLVVIWNNLSEWAGSADSAEIRAKVVHGYKEAIEREKK*