Scaffold Ga0153703_1378

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1378
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15765
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004664	Metagenome / Metatranscriptome	428	N
F005740	Metagenome / Metatranscriptome	391	N
F007361	Metagenome / Metatranscriptome	352	N
F012040	Metagenome / Metatranscriptome	284	N
F012111	Metagenome	283	N
F032582	Metagenome	179	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_137812	F012111	AGG	MPSEVDKNQVAFAVNASFRQSFVSPRPGFIQKDYETCLSITADNTLVTADQTNVTVDGYSEECYSSSGLTGVFQCALPYIGDNGATFILMLISGKVWLYDCLQNSVQSLSATPDLENPSNILDGWMVQAENFVVIQDGQSTPLIFNGSSLRRATIDEIKCGRVMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDVWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNIIDNDQADLLWASSAVVFDNRLLMTSQPRYNAEGVVHKSLVVLDFDLITSLRKKFPPAWAGIWTGLDVLQVLKTENAYGDRCFSIARGLDGTIQIWEISKTEKFDNNLAAGKKEIQWLVQTRAYNFELPFGLKRLDSGDIFIDSLDGDVSFNIEYRPDQYPGWIEWADWTECAATLQCQPACPITNFQPQYRPKMRLPTPSDIPCNSSISTPTRNMYEVQMSLTITGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLEGCDVNPFLYTSE*
Ga0153703_137814	F005740	GAG	MKLIVQDIRSTIARVIGTCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIESVADCCGVGTVRNQWFEFQESGYGLLGGENGACVGKQLVDRGTVVSYRDMSGGTNSYLRVYPGDASDVGKTITLQGVDQNGNWIRTQSGGVWIDGEKLTLALPYVQSTKKFISLSGVIRDATNTASRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCSNDEDKPVTVMAKMRHINATSANDYLIPPSPDAIKLMVMAIRKEENDLIQEAMAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF*
Ga0153703_137816	F007361	N/A	MNGKLFQICGLPRFGSAFMSVLFSLENDCIGLHEQGATDPDWKKSIEKYRMRYKYVADCSTYGYLPKAVVHDSIKVYVKKDAESSAKECTERFGYEVHLPSVQMLREYADQWASLHGVMTIKEGELFKVDTLRDVWVHCFHNERAFPEEKAARLITMNIQRHEPEKVFSIENGNRLVKEVF*
Ga0153703_13782	F012040	AGGAG	MQLPEVDILEWTNSGQTAELAIILQNPLLRMALRIVAESMPIPMPSNGTKESDIIFAAGVTAGYAHCLENLRKLAVTDTTREPEATFEKQY*
Ga0153703_13784	F032582	N/A	MKLQLEKTPCFIVSKPESEKERRCIRYMKTFGIDAVPIYGFRAENCGISTDYYHTREKEKAKVKTIVAGLSHFSVWSAIKWMVESKVTDHRTFLIVEDDVEFTCADWKAKLADNLDYLPSDWHVVYIGSCCADPIEDHGYIASNLYKLVRGMCTHAYLVNYEGVCKLLETNQKVWCPIDIQMLVDSMPRMNFYGILPRLATQENTKLYP*
Ga0153703_13789	F004664	N/A	MTYGSNTGYKLLNDHLGLPGGWFYRVPETGIEVTAGSWPQLHEFVRNHYKSNAINIPSNLDVLMLEFICKKGADCAYNEVEIPKPAGRKSLQIGDVIKFSMSLLHGLTVGGGKVGQDEANRRANICSTCQFNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDESLQSCEFCGCFIRSMVWFPIETLHKFSDATENENLPAHCWKKRSCTET*