Basic Information | |
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Taxon OID | 3300011336 Open in IMG/M |
Scaffold ID | Ga0153703_1308 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 17990 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (32.26%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Hanam-si, Gyeonggi-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.5415972 | Long. (o) | 127.243111 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001775 | Metagenome / Metatranscriptome | 636 | Y |
F008081 | Metagenome / Metatranscriptome | 339 | Y |
F014605 | Metagenome / Metatranscriptome | 261 | N |
F024318 | Metagenome | 206 | Y |
F030017 | Metagenome | 186 | Y |
F048316 | Metagenome / Metatranscriptome | 148 | Y |
F099147 | Metagenome / Metatranscriptome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153703_130811 | F001775 | N/A | MKDLLDDERIKIAVLAFLAGVILAFIVFPKREVETVYKTNIERLTDTLYITSTDTIYIPKTKIKTKVLRDTFLIDFKPKISLFETTFPFEYGSTKVSGEVLGEVLKMTAINDYTIPVVTNTITETKTETIIKKPKGIYLGAGVNSLIDPSVKVAYLDNKYLFQYQYQPVTKIHTLGVSKKLF* |
Ga0153703_130816 | F048316 | AGG | MKRFFSWAKGFLSENGEASSKRLVGVISAITLSYTLIRNQNEPLVYSVAALSAAALGITAAEKIFKKPTNENKS* |
Ga0153703_130819 | F014605 | N/A | MIVNLAIALTDIEGNKITNENGEFMYLSKMVGNALFAAEEKEDPIRLYELAKKVYYSDGDMEISKSDADLMKDKVKAKGFTVLVLGPLYEALKEK* |
Ga0153703_13082 | F030017 | GAG | METCEIMQKVKDLYLEGFTRKKIAKVLGLDDQKVGYLLYTKMKLHEIYPRKLMDENIFQILSDQQIRRILTLFTYGYEIREIAEDQNLEFRKVKKLIDVAESKNMIEKKV* |
Ga0153703_13083 | F024318 | N/A | MKPHLYLGKFIQRPADLAPKGIASTYDKEKLPFNETWLRLWKLAR* |
Ga0153703_130831 | F099147 | N/A | DLEPFQKGEILSVGKTYDTYLVDKGLAVWIKVDKQDFKKK* |
Ga0153703_13089 | F008081 | N/A | MEETEILNPFGFGNASRVIDENRKPADYWQDFFDLHQVLAENEFYVLFDDGLLVKKGRSKFTTSQYIKGDKFTSFAKVYARFYQPGSGRINRD* |
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