Basic Information | |
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Taxon OID | 3300011336 Open in IMG/M |
Scaffold ID | Ga0153703_1253 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 19420 |
Total Scaffold Genes | 48 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (14.58%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Hanam-si, Gyeonggi-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.5415972 | Long. (o) | 127.243111 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001775 | Metagenome / Metatranscriptome | 636 | Y |
F005529 | Metagenome / Metatranscriptome | 397 | Y |
F008081 | Metagenome / Metatranscriptome | 339 | Y |
F029443 | Metagenome / Metatranscriptome | 188 | Y |
F036704 | Metagenome | 169 | Y |
F044503 | Metagenome | 154 | Y |
F047062 | Metagenome | 150 | Y |
F093880 | Metagenome / Metatranscriptome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0153703_125310 | F001775 | N/A | MMDREQTRIAAIFFLMGVIVAVILFPKKEIETVYKTTTKIEKDTIYVASTDTIYIPKTMIKTKVLRDTILLDSKPKISLFQASFPFEYGSTKVSGEVLGEVLKMTAINDYTIPVVTNTITETKTETIVVKPKGIYLGAGINSVLDPSVKVGYLDNKYLFQYGYQPLEKIHTLSVSKKLF* |
Ga0153703_125311 | F036704 | N/A | VLAKNYSDMWIEIDVMLSGSTMDWKELGLDVKHEFVRRMVRVQDIAYVQELVHDIQIIIFYDKTSCLIRGEYQRIRDEILHLDQEEEDL* |
Ga0153703_125314 | F008081 | N/A | MEESEILNPFGYGKASKVIDENRKPAEWWWDYLEMNEAIAENEFYILFEDGLLVKKGRSKFRTSQYLHGDRFKSFKQNYERD* |
Ga0153703_125316 | F047062 | N/A | MNYNFEHYTDQEVDFTYDGIDYKWIGDYTIEYYGEDETEYTPAYGEMEVRINHTSSLMSYEDGAEIIPTASILMAVELEIERNQ* |
Ga0153703_125326 | F044503 | N/A | MRRRYLTEYEKELIFERWQDRIPTKVIALELGVSYMCVYNQLKKRYLVG* |
Ga0153703_125328 | F093880 | AGAAG | MESKQIQEMNDLNRDIWGMIVQAQKTKNWALIEINLKRLYSLQKKYINLINLMDYEVKGTTLALKDEIRVRNKFEKQWFRDVAERNGHYKAMKENIDKYFKDEEIG* |
Ga0153703_12533 | F029443 | N/A | MTLSELVAKLKAIQEAHPMIRTFGEGDIYDYVDNGGEIQYPVLWTVVRPAQYSTSVIRYRVVLLFADLLTEDKSNRLQIQSDQMLVALDVLAKLKLDTAYSFNPSTNATIEFFQERFDDFTAGVSIEIEISSPVPLNLCAIPTT* |
Ga0153703_125334 | F005529 | N/A | MPRTLPISKPDYSLEMRFKTSSGEWSQWINKGKGLFQSIEIVQHQIRLITAPHRGNEIEVRFTWNGWLCDYSGQPTGEVIKFK* |
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