Basic Information | |
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Taxon OID | 3300011336 Open in IMG/M |
Scaffold ID | Ga0153703_1090 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 32704 |
Total Scaffold Genes | 48 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (79.17%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Hanam-si, Gyeonggi-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.5415972 | Long. (o) | 127.243111 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006110 | Metagenome | 381 | Y |
F007517 | Metagenome | 349 | Y |
F076887 | Metagenome | 117 | Y |
F079703 | Metagenome / Metatranscriptome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153703_109032 | F079703 | GAGG | MIDPNKLQYFTMAAWMRGYASGLDAHEHSTLIHKLNKAADMLDAVWGKYQEDKNEKTA* |
Ga0153703_109033 | F076887 | AGGAGG | MKRPLSETTARQTIGMMRSIASHKPITPFHLMAADEMEQLLEEVLKYRKEKKDESARVSKV* |
Ga0153703_109034 | F006110 | AGGA | MPRPKPPEPLIGRQVRMSDRQWIIFNQLGGAEWLRTIITKKAPMPKQYYDALLQEKPNDSKSR* |
Ga0153703_10907 | F007517 | AGGA | MMATLLEVLNKKLDEHIKQSVDSVSGGSAKSYDHYKELCGVIRGLQTAQVEIADLVRKTKEYEDD* |
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