Scaffold Ga0153698_1960

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1960
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10116
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019448	Metagenome	229	Y
F033000	Metagenome	178	Y
F042304	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_19603	F019448	AGGAG	MTAITKTQMVNACVDYETDWFFDREPAEQREVFRHIQLHGFKGFANYPDDALFATCVDKGIFLMEE*
Ga0153698_19605	F033000	AGCAGG	MTLESKNCKACRPKRKPTTKLSAKEIHNKVQTGDMNVLVAKHLREKQAQDERNAQAIAARKRWLKVWKAELADVLAPIKWEIVSARNAWMYAKRNGYVDKATFYHEYMGMLKRAKEYAEYSHALHPRRPASAEWDDYIEPEVFTKIRDMWAALPPIYKQSRTPMLIKYRDEFTQVNKDSKFVPPRSLAFLKGESK*
Ga0153698_19607	F042304	N/A	MSIGVFIMQKLLNAYRKLPSPTNRAKLQAYLNKHMMAVCLALPEDIAFLKAHNFSI*