Scaffold Ga0153698_1957

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1957
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10142
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010620	Metagenome	301	Y
F010918	Metagenome / Metatranscriptome	297	Y
F061550	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_19571	F061550	N/A	MEIQILKARTILRKTLLKLKISREEIEEKNGHRTDLINSMLETENEISEVLTTFLVLEKQSREFSQSAYRLERLNLDLKFKIKELENEIEANNF*
Ga0153698_195711	F010620	N/A	MKKLIAFLSVLTMFSCSSERLVQYHYQKALKHGLKLITDSDTIRIVSIDSVAVIKNDTIYWEKIITSKDTIIYFKNVYVPKTKWQTRIEYRYKTQLVKQDVLKYKYIYKDSKNKKAKSNWNLFLWGFISGVGLFFLLRLFDKLRRIV*
Ga0153698_19575	F010918	N/A	MKRFKITFNYFENGKKRLGIRILEAYDRDHAILKMDLHRPLILKVETL*