Basic Information | |
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Taxon OID | 3300011335 Open in IMG/M |
Scaffold ID | Ga0153698_1884 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 10773 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (91.67%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Hwacheon, Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 38.0874861 | Long. (o) | 127.761456 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F006110 | Metagenome | 381 | Y |
F007519 | Metagenome / Metatranscriptome | 349 | Y |
F034467 | Metagenome | 174 | Y |
F075680 | Metagenome | 118 | Y |
F080867 | Metagenome | 114 | N |
Protein ID | Family | RBS | Sequence |
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Ga0153698_188412 | F006110 | AGGAG | MPRPKPPEPLIGRQIRLSDRQFHILNHLGGAEWLRNLLDKKDPFPKKYYERLKDDDRN* |
Ga0153698_188413 | F007519 | AGG | MTTGIEYLKPEQQRKGRGLGKKPALSCTSLRLPKEVMDYFNTNFAYTKQAKMREVLTEYVNNQTGNKS* |
Ga0153698_18843 | F075680 | AGGAG | MGYRSNVMAVFYTYDPMEYPSIKLFIDEHIPEWCRGDEYMTTFTGSNNLQGIKFDLQDVKWYESYPDVQGFEQALKKFEKLADEGSKWNWEFVRIGEEVEDVEQRRGYNADPLLYVSRSIECDY* |
Ga0153698_18848 | F080867 | AGGAG | MNTLSLSNVVIGEDLQKSLDKEGLKLTGVFGMLDPVVSRLASLNPLWTFVINSSGLGTGSNRVASGFSVKLDGELLGTIGLSYMGQRGKVIAICNDRIGKGRQRSDSYRTVDADKAILMAKKMFGKMNPSERISKAKDAAERVVTRASWNKERERTQHQSLVKNEMLAWVETKGHDMFMKYIKIEAIPSLKHKVTTSMEKVALLDTEMKTIEKVQEDFSNNKTALVVKDSGKYLVKIGDKVDLYDDNTLPLDMRMKMGMLKLVEDEQYLTDVGCKVTSEIFVLLVDELTNVSEGV* |
Ga0153698_18849 | F034467 | AGGAG | MEQLKYSSKAIPLRGCNDPKFKWINSAQTDIRRTFRKARLLIRITKGAAYESRT* |
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