Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1884 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1884 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	10773
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (91.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10773

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (91.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006110	Metagenome	381	Y
F007519	Metagenome / Metatranscriptome	349	Y
F034467	Metagenome	174	Y
F075680	Metagenome	118	Y
F080867	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_188412	F006110	AGGAG	MPRPKPPEPLIGRQIRLSDRQFHILNHLGGAEWLRNLLDKKDPFPKKYYERLKDDDRN*
Ga0153698_188413	F007519	AGG	MTTGIEYLKPEQQRKGRGLGKKPALSCTSLRLPKEVMDYFNTNFAYTKQAKMREVLTEYVNNQTGNKS*
Ga0153698_18843	F075680	AGGAG	MGYRSNVMAVFYTYDPMEYPSIKLFIDEHIPEWCRGDEYMTTFTGSNNLQGIKFDLQDVKWYESYPDVQGFEQALKKFEKLADEGSKWNWEFVRIGEEVEDVEQRRGYNADPLLYVSRSIECDY*
Ga0153698_18848	F080867	AGGAG	MNTLSLSNVVIGEDLQKSLDKEGLKLTGVFGMLDPVVSRLASLNPLWTFVINSSGLGTGSNRVASGFSVKLDGELLGTIGLSYMGQRGKVIAICNDRIGKGRQRSDSYRTVDADKAILMAKKMFGKMNPSERISKAKDAAERVVTRASWNKERERTQHQSLVKNEMLAWVETKGHDMFMKYIKIEAIPSLKHKVTTSMEKVALLDTEMKTIEKVQEDFSNNKTALVVKDSGKYLVKIGDKVDLYDDNTLPLDMRMKMGMLKLVEDEQYLTDVGCKVTSEIFVLLVDELTNVSEGV*
Ga0153698_18849	F034467	AGGAG	MEQLKYSSKAIPLRGCNDPKFKWINSAQTDIRRTFRKARLLIRITKGAAYESRT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1884

Overview

Ecosystem & Geography

Associated Families

Sequences