Scaffold Ga0153698_1860

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1860
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11008
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003065	Metagenome	509	Y
F009801	Metagenome	312	Y
F022373	Metagenome	214	Y
F054583	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_186010	F003065	AGGAG	MSNHDLNIWERALGWRKRQMIIKQLDPVTNQIRNNTLEEVAKEFEAMKNGGDTTASFAVYVRSMKK*
Ga0153698_186012	F009801	AGGA	MNECKKEYCDFIGSKAFEDDGGWSYEVWQAAQQAVFKRIANRFANYKDIDYTGHEIARYVNFLAKQDVPE*
Ga0153698_18608	F022373	GGAG	MQPKVLLEFNYPDDEDRLLFAIKGPEMYKALTNIKMAVTGDFNTKADLNAVLDRVRDLTDQIFEELGE*
Ga0153698_18609	F054583	AGGAG	MRGTGFGNVLAGNIAALRGQQRNEKRMSQKWKMCWKCQKDKTPVGGYLRISAGLHKFICKDCMDAKEKKNE*