Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1799 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1799 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	11654
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (88.24%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

11654

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (88.24%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Candidimonas → Candidimonas nitroreducens	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Candidimonas → Candidimonas nitroreducens

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005233	Metagenome	407	Y
F032571	Metagenome / Metatranscriptome	179	Y
F045603	Metagenome	152	Y
F091622	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_179914	F032571	AGGAG	MSVSIKSQVVLIKKEGDASAKADLARVALKKQLGRKSRESVRAILLPEFSSVYDVKLVAGAGKKTGEKVLNSEASAYEACRKALGRTITFICGAESNDAVEVSPKLVSDLTKKIIDAGLDSKQFNALLTALRANITFE*
Ga0153698_179915	F005233	N/A	MLEHLINGEFHPEVVDATAEVLSFEKADPTATIDAKVKTAQWLKDLELEDEAIESKAEQESARKSFASLVSGQPVGNTQQALANLKSPAAVQHLVGMLTAYDWAFVEQAKELRGYAVAQILEEVKHPDARIRLKALDMLGKVTEVALFTERIEVKKEAMSDMELESRIKDKLNRFMGVIDVVDVIEDKDEA*
Ga0153698_17995	F045603	AGGAG	MGLDINIVSVHRVVATKPADAYVGSQYDRTPKWRQVAYERGAWDLHALLAMLYRKQGGTQEEFNNVNVRLYKRDLRLFDASISAPILEHMKKGRVVYAESSF*
Ga0153698_17999	F091622	GAGG	MLNTYIKLKPNDLHQRLLKERIHPAEMQRIKDEVAQAKEAQRVDKITRTQRKSEWDKVLKPLRYELNNAKVGRAYDLDDDERVDAFDAYILVMETLLSKFATPLASLDATPIQLALDKGLPNNGEHWTDWVPDKIKTRIALIFEALPHKTRAKRKVPFQRLTTPEQNAKARDKLLARTRKEIETLERKQEMNSTEVGQATLGRMRDALKIIARLTDTEHIPATWSGVL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1799

Overview

Ecosystem & Geography

Associated Families

Sequences