Scaffold Ga0153698_1628

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1628
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14046
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (31.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037195	Metagenome	168	N
F043895	Metagenome	155	Y
F059910	Metagenome / Metatranscriptome	133	N
F093769	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_162814	F093769	N/A	MSNSSLNELDLLLGLPKPVEEMTDKELEKFLLRHFPHTRPTGTDLASLLNDPLLKGIDVQAIINQTQNFKFKK*
Ga0153698_162816	F043895	N/A	MKTLMLSIMICATETSLIALQQDFDAKLRAISQVESGDNDKAKGRHGELSRYQIKHTVWKQHFPSEKDQRHIPLHAKRCARAHLCWLELKLCLLKKTNNPNPRDVYAAWNIGLAAYARRDYTLDKLPNNIRQRADRFTNLYEDYRNNQ*
Ga0153698_162818	F037195	AGGA	MNIFTTKFPDPPQHDPAKLLQEAERLLNKTERKQGWPYYDIKHAVQFAQMVVKLSKIPSKKATINTLTLRQQPQTVRARLSQGKAFIVDKGIGVLRGQIHEDDMPLVSELSEKVQISVRKVNLIIELVEPIDNILDAMVPLMGGTDEDPFVFNEDVFRDQIAEFINSGEIGSQASWQNYTTSAEKYARQLAMQDNTIIIETTPTELIIMKMSEEMLKGLE*
Ga0153698_16289	F059910	N/A	MKKGTEVKLGFIPANVYKVLVHRTETRQSAKGFKMVVCECEIVAPETAIAAGTTYKTLGAKGNMYIMLENKNGVDSALELLATPLQVIGLYDGLPEDYSDIDVADALSTLQGHAFNMLVQSQPEYVSDDPSNSRDIKFAKRDENGEAIIKRYNTQFDFSQVKGTAALLCEF*