Basic Information | |
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Taxon OID | 3300011335 Open in IMG/M |
Scaffold ID | Ga0153698_1479 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 16596 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (85.19%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Hwacheon, Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 38.0874861 | Long. (o) | 127.761456 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002934 | Metagenome / Metatranscriptome | 519 | Y |
F004050 | Metagenome / Metatranscriptome | 455 | Y |
F007223 | Metagenome | 355 | Y |
F020007 | Metagenome | 226 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0153698_147916 | F002934 | AGGTGG | MNMKHPAVISVGAFLAVWGTTSNFALDYRAILGSIVAGVFGYASPKK* |
Ga0153698_147918 | F004050 | GAG | MARKKVIDLDTYSRLDAWAISLHEMYRALRRAGFAVDIALSIIQDRDAYPEWILPEIPNRVDRLPYEDDDED* |
Ga0153698_147921 | F007223 | AGG | MFDPSLGDLIAMIALSALYFHLGRTVGIRVGYLKGRKAVRDYYDKKERVRV* |
Ga0153698_147926 | F020007 | AGGA | MNLTRMVRSVARAHQGLNPGPKGTARGVAIAIGISLSIAMPLDAKASNQAIRYVKDLAQYQLTDKQESCHHEIVYRESRWILRAVGNKSGTKQTHGLYQIKSESMRNASAVKQFWTYWHYVAHRYGWTEYDEPDYCKALHHLKTKGWQ* |
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