Scaffold Ga0153698_1223

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1223
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 26440
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (67.65%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F012328	Metagenome / Metatranscriptome	281	Y
F015856	Metagenome / Metatranscriptome	251	Y
F026827	Metagenome / Metatranscriptome	196	Y
F030356	Metagenome	185	Y
F079653	Metagenome	115	Y
F100336	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_122311	F012328	AGGA	MSKKLSPPATAQVENPWDESASPTSEEIIEVAEQVAGIVPKSTSNADFDLEGLMTDFPTAKELERFVFDETGIVLNLKGRANKLKYQVAMDVLNGEEVDPKFLGGDNPYIDRTELVPVEELKPVPTRDKHLPDSNQMQNIFVSNAIPHTDFEYRMQDKKVSVYFRKYKTGEISYEIVGPIDQRPHGIKLDKYGRERPEIIKWVDPRTGEQTVVRNDGTLTPQGRKLRALMQSFKVNNSNQWDTWIDREFISLGDNVLTNVWDLDK*
Ga0153698_122312	F100336	GGA	MTARDAEIRRATEQAKVSDTMIMQKVNASHRVAFAEKFPGQLEHILRLLTERLQAGLDKRDGVDLDSPTTWKMHPDELAHMARAILDIYTVKERLNNV*
Ga0153698_122315	F079653	GGA	MTQPKFICAIENNTMILCEKHAKNFEIAACTAMTPHTIIEMEDEDHDGHTCMACNLQDELNRPRIILPGEN*
Ga0153698_122317	F030356	AGG	MLDIKNIPVQDINQNKKINATFVRMKNQMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPTVKPIVDYATAVIAKGLMPNGEINFEFVADGEFDEEAARQATNMVSKVVNQMNDPHFILERWVMDACMHKNGMMMIKPVRELVTRYVETQGTNEQLKAFELQAAESGLTTLRQSKRQINVMMDKAMAEIKQLLEAQKQELSNELMDKHIESMRNMDDEDNYAELASGQAQVLNSQVTGQEEIIASAMSRNTIYKAKYKVTGYNINIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEAVELYPDLNGDLENFRQFAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPDSRQVSIVTVWNKYDIDGDGEMELVELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYSTSAARAEIQLGLLTATPRIGVKPDKLDFEMLQDGEAAIFILDSKFDPAKDIYQIPPPSGNLNFLETSMNRIQKDTMAMIGMTTPQDVFNPEVMSAGNSGVKLQMALTPNQIIQDNTVRNAAEGLKESLYLIWRTLIQYGDDFGVKKLAGTCRTDKKPEFMDYVSWDEMTSMTDRKQLNLELALGMMSEENALNRLQIIQKCQTGLMQTVQNMVQQGVMTPEMYKKIKKPYADTLYTLSVKDCDVYLPSDEEIAKMMAQAQEAQKNKQPNAQDKKYLADAELAQVRAQQIAAEVAGEDAESQLDFMAMAMGEPKVYS*
Ga0153698_122318	F015856	N/A	MIDNNTIDFYNSRLTVDLSQPSKLTTSQKDQVRHYGSLAEALLKNKDLAMFVHHFKFSLADELASIRSHQPDDNARRVAISNELTGIDDFVNSLKRAVYLKNRIGNTEQVPNT*
Ga0153698_122321	F001299	N/A	MSNNQPEYLDDSDPEKDLNYYRQDHGGVVTSHNGVADKLLQNDDLYRSMKGDWTRTAANKSGNIIVTTGREDGKFYIKREQQNTEAIKQAVRNYRTAAEAGVPDPMAPIGDDGKLSFKWMDLPTVIAVRISDQYFDGIPWNALKNDRTLKAQFYRVVETEYPEYVCYPGGKLPIPVAVAYPTKKGEKKYFRGH*
Ga0153698_12239	F026827	AGGA	MKSTNPQGNKEINQKRGPTTGNAGTMKKRDTYVAEKSASSGEKSKLASMITDALEMRGRGQAGKTNPALEGLHSTTGKAANPTANGSKLPAKYKK*