Basic Information | |
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Taxon OID | 3300011335 Open in IMG/M |
Scaffold ID | Ga0153698_1219 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 26971 |
Total Scaffold Genes | 49 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (34.69%) |
Novel Protein Genes | 11 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (36.36%) |
Associated Families | 11 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Hwacheon, Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 38.0874861 | Long. (o) | 127.761456 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001840 | Metagenome / Metatranscriptome | 627 | Y |
F006260 | Metagenome / Metatranscriptome | 377 | Y |
F007798 | Metagenome / Metatranscriptome | 344 | Y |
F009604 | Metagenome / Metatranscriptome | 315 | Y |
F019824 | Metagenome / Metatranscriptome | 227 | Y |
F023346 | Metagenome / Metatranscriptome | 210 | Y |
F039627 | Metagenome / Metatranscriptome | 163 | N |
F045085 | Metagenome / Metatranscriptome | 153 | Y |
F079812 | Metagenome / Metatranscriptome | 115 | N |
F084133 | Metagenome / Metatranscriptome | 112 | Y |
F087174 | Metagenome / Metatranscriptome | 110 | N |
Protein ID | Family | RBS | Sequence |
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Ga0153698_121910 | F007798 | AGG | MKDTTLKQLVRDRKGQPRGMVIATVIDGTIRFGWSHTNTKAGDRFDKCKAFTIALGRAENGWGPKTNVPVSTVKILNKMIDRSVRYYKNVPVYGI* |
Ga0153698_121913 | F079812 | GAG | MDGKNSRIGYVKDSGSVIYAHGPNGENVGYYNKSNDTTFDRSGKRYGFGDLTNALVFEAARKN* |
Ga0153698_121915 | F039627 | N/A | MTASFYKTVYQRKFNEMPRWKQLAIVEDSTRNNWSGLLTDFVKAVIEEAEKEYANSKTNEKIPSVEYKKDLENKFKKTIKKKS* |
Ga0153698_121916 | F009604 | N/A | MIECGCGNEIHPERYELGYKICLPCGEKSAKRSQKFGYLHFGHKTAGSIVITTKKAFDNYTKVSYRKGKASNMAYASRLSTSF* |
Ga0153698_121917 | F023346 | N/A | MKHTPTIVSKNIIFTYARKIRNVQSEQIDPYIKLIEQELIKIYPELKDREDNALNWAYDIINSASNTDVSDTLTRLDDIITNERKSQWVCDYCGKNTYNDDCEYLFGKNHMGCALEDDIKNREHSDPDYILDARHRKITEIESKLNHYESELDKLQSELRRLSRGYPHEPTN* |
Ga0153698_121918 | F045085 | N/A | MNKVIDLTVGLLFGSIFAIGLLIVLTIFFVVLIPFIYYFTLKEVLKALTKTK* |
Ga0153698_121920 | F001840 | GGA | MKDQDSIFLICDCFSHGLLVEKFKDEEEVSLSLFERGLNGRTLCWSERLRWCWQILRYGKPWSDFIILNTENQKQLKDFLNEVQKF* |
Ga0153698_121922 | F006260 | N/A | MEVDLTIKDKAIPPIIIQHDDLKFDGKTITIPSYYVNIILDYIKDYDVDGVPEVDIEDYIAFRNFLYDIQEHKNKGN* |
Ga0153698_121940 | F087174 | N/A | MSYYIKDTTINKVITFNDINEVVKYLEGLCIKKTKKQRKDFMYDMSELGHGYDDPNGINFTNLMSDHFEVGALKKDGRLVRTNIHELVRNNKYRNEMGD* |
Ga0153698_121948 | F084133 | GGA | MFNNKIQGMNQTPNVNFGLKDTQSVQCPECQGVVFQNGVMFRKVSKILAGTDKDALVPINIPYCVNCLEPLNELLPSELKQAKFSLEQ* |
Ga0153698_12199 | F019824 | N/A | MDKYITDNFTGSIDDLLNHCTNLDLDKVEEQVKVEEKEACIKIIMKEASCDELEANVIYNEILLTETKTTVDKMVADGLLYVSGHNEDGEPLFQLTELGKAVRNELGDGK* |
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