NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153698_1219

Scaffold Ga0153698_1219


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1219 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)26971
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (34.69%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Associated Families11

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F006260Metagenome / Metatranscriptome377Y
F007798Metagenome / Metatranscriptome344Y
F009604Metagenome / Metatranscriptome315Y
F019824Metagenome / Metatranscriptome227Y
F023346Metagenome / Metatranscriptome210Y
F039627Metagenome / Metatranscriptome163N
F045085Metagenome / Metatranscriptome153Y
F079812Metagenome / Metatranscriptome115N
F084133Metagenome / Metatranscriptome112Y
F087174Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0153698_121910F007798AGGMKDTTLKQLVRDRKGQPRGMVIATVIDGTIRFGWSHTNTKAGDRFDKCKAFTIALGRAENGWGPKTNVPVSTVKILNKMIDRSVRYYKNVPVYGI*
Ga0153698_121913F079812GAGMDGKNSRIGYVKDSGSVIYAHGPNGENVGYYNKSNDTTFDRSGKRYGFGDLTNALVFEAARKN*
Ga0153698_121915F039627N/AMTASFYKTVYQRKFNEMPRWKQLAIVEDSTRNNWSGLLTDFVKAVIEEAEKEYANSKTNEKIPSVEYKKDLENKFKKTIKKKS*
Ga0153698_121916F009604N/AMIECGCGNEIHPERYELGYKICLPCGEKSAKRSQKFGYLHFGHKTAGSIVITTKKAFDNYTKVSYRKGKASNMAYASRLSTSF*
Ga0153698_121917F023346N/AMKHTPTIVSKNIIFTYARKIRNVQSEQIDPYIKLIEQELIKIYPELKDREDNALNWAYDIINSASNTDVSDTLTRLDDIITNERKSQWVCDYCGKNTYNDDCEYLFGKNHMGCALEDDIKNREHSDPDYILDARHRKITEIESKLNHYESELDKLQSELRRLSRGYPHEPTN*
Ga0153698_121918F045085N/AMNKVIDLTVGLLFGSIFAIGLLIVLTIFFVVLIPFIYYFTLKEVLKALTKTK*
Ga0153698_121920F001840GGAMKDQDSIFLICDCFSHGLLVEKFKDEEEVSLSLFERGLNGRTLCWSERLRWCWQILRYGKPWSDFIILNTENQKQLKDFLNEVQKF*
Ga0153698_121922F006260N/AMEVDLTIKDKAIPPIIIQHDDLKFDGKTITIPSYYVNIILDYIKDYDVDGVPEVDIEDYIAFRNFLYDIQEHKNKGN*
Ga0153698_121940F087174N/AMSYYIKDTTINKVITFNDINEVVKYLEGLCIKKTKKQRKDFMYDMSELGHGYDDPNGINFTNLMSDHFEVGALKKDGRLVRTNIHELVRNNKYRNEMGD*
Ga0153698_121948F084133GGAMFNNKIQGMNQTPNVNFGLKDTQSVQCPECQGVVFQNGVMFRKVSKILAGTDKDALVPINIPYCVNCLEPLNELLPSELKQAKFSLEQ*
Ga0153698_12199F019824N/AMDKYITDNFTGSIDDLLNHCTNLDLDKVEEQVKVEEKEACIKIIMKEASCDELEANVIYNEILLTETKTTVDKMVADGLLYVSGHNEDGEPLFQLTELGKAVRNELGDGK*

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