Scaffold Ga0153698_1191

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1191
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 29634
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (40.91%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014726	Metagenome / Metatranscriptome	260	Y
F014837	Metagenome / Metatranscriptome	259	Y
F016141	Metagenome / Metatranscriptome	249	Y
F023295	Metagenome / Metatranscriptome	210	Y
F024095	Metagenome / Metatranscriptome	207	Y
F030057	Metagenome / Metatranscriptome	186	Y
F035672	Metagenome / Metatranscriptome	171	Y
F043831	Metagenome / Metatranscriptome	155	Y
F048257	Metagenome	148	N
F063343	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_119115	F014726	N/A	MGFQSESIISAASQKFGVIDYSRWQAIRWQWYSYVTYPVAGTGELNFFGQVAGQTGVTLQDTNLPKAGSFGQTHFQLKSISTDIQLAVNDVDGFTLANQITGGASGIDTQAFATDYLGGFVQAGVLQFSVGARPFATIPKPFQYAPPPGSPLDYDNAFVNQFKASTAVTAGFATNPSATAAAATQSRDVVGVPWITQTKVRNNVYFVDPNILIEAEQQFTVKISYPSGLVPILATNVVNDTTKQLKIGVIFDGLLLRPVQ*
Ga0153698_119116	F016141	AGGA	MTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLQSAGTNSVSFFSNPIGATDPGAGATLYKTLEQTNLVKNASFGQEYFALTQIRCYAGFVNQSRQPVSVGTNFTYRGYTALTDSAMEKLQTVMNTGVLEISFAQKLYYQIARPLIQCPPGFGIDIQSLASSRTGTEPVATAQASGSNWLARPDYRATSVYNIDPIQIIEPEIQIQAAINFPNGNTPDFLNSALTTADATFTPSVELGLIFDGYVIRPSQ*
Ga0153698_119117	F024095	GGCGG	MDNTNSLPFVYVVTSTLGNAVGATGSSTLIMQADSRFELMGIFGTGGQTATTEDSLFYPNSFTVSIRDQTTGRDLMSAPVPQRVLCGNAFQQFLEKRGIIFEPQSNLLFTFTNLTGNANIITLALHGYKIII*
Ga0153698_119118	F014837	N/A	MIQRNINPKPRFVTLTSNVSTGVLVGVPLATLYNAAFFRFPQDSIIHYVMVNSTLTCNGAASQAIGAIAYGQGNKTIGESFNAGFPNFTDALIWRDEVLNPIAGVISEGKSTQIILNEFFVHTDSSIGIYVNGINASVNINATISFNPIAEWINFREPTVGVRI*
Ga0153698_119123	F035672	AGG	MNFHDSIRDLGIGVGGPAGGLLVANIVPDPLVAHISVTLGALAALSVIIKNVLDIWSNRNK*
Ga0153698_119125	F023295	N/A	MLQSMGCQTRVILVPEGQPVMLAESVKAKVYAFDATGKLTPSSNKVTLPAGWYALPRK*
Ga0153698_119126	F063343	AGGA	MALFIFGQKVRTNWVSGIKSTLTKLMVPGADRRLFSGFTASPLSFIRNAASWVRVFNWTGCAAGINGLGGVGGGTLISRRHVLFANHVPYPDRPFDIFFANKDSRTFTYKVTNIQQVGDTDIAIGTLDRDVDPSLNVYRVLPDSWAQYIANKAESFNVMGVTGTSYALVLPVLYVNQDKKVSTADVYSIMSGTAAVGIPAFEVARAFGDGVRGGDSGNPIFAMLGDELVLLGAWHQGKSGDQIGAFPWLAAQKPAIEKIIGQKLLVADMSGLTKV*
Ga0153698_119128	F048257	GGA	MTAFPSSVAARKLLKGENYTDSAFYVLRRTLLIRSGLSLAGEKENIWKKSLYGSLAVQAFVTAWTATHMDEPVASLPSGEVAVAGDAVGILGTYLLRSAIVGTGLWLSGERKNLTRNTLISTALIQASVMLWAKDQEV*
Ga0153698_11914	F030057	N/A	MAVVYNLKKTLGGQLWKWEDGTEKVFTIVSPIRAGKAVSNPRSGIAKAPDIMTVRDAADGSEKEILVGAVLKSSLVENYPDDSYVGLTFACTQGPVRAGTRYKTMSVAEVEVDNADLVIAPAPKKAKK*
Ga0153698_119141	F043831	N/A	MTAAQLAAIAYRLGAIDIIAAQIYQLTLELEDLQEGSLSVKLELALRAFDERAAEHRSILDQYANEITINPTPSGQGGQTTSHKQENL*