Scaffold Ga0153698_1134

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1134
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 33535
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (79.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F015856	Metagenome / Metatranscriptome	251	Y
F079653	Metagenome	115	Y
F100336	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_113410	F015856	N/A	MINDDTIEFYNSRLTLDISQPSKLTTSQRDQVRHYGSTAEALLKNKDLAMFVHHFKFSLADEIASIRTHTPDDNARRIAISNELAGIDSFVSSLKRAVYLKNRIGNTNEVPNT*
Ga0153698_113413	F079653	GAG	MFICAIEQNTMVLCEKHAKAFEAAAMVAETPHTIYELEDEDAVTAKCHACDLQDELTRPKIILPGEF*
Ga0153698_113417	F100336	AGAAG	MSTDPTMRDGAIYQAQQERMTKDTLILQKINASHRVAFAEKFPGQIEHILRLLTERLQAGLDKRDGVDINDPDTWKMTSKELSDLSTAIHHVYIVREKLKDVQSDTQ*
Ga0153698_11347	F001299	N/A	MNDINQPEYLDDTDPEKNLNYWRQDHGGTITNHNGVADKLLKNDKLYNAMKGDWTRSDWNKSGNIKVTTGREDGKFYIQREQMNMQAVIEAVKDYRIMAEKGITDPLGPYMPDGTVGWKWIDLPKVVAIKISDEYFGGLPWHTLKHDRSLKAQFYKVVETEYPQFVCYPHGKLPIPVDVPYPTKVGQKRFFQGR*