NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0153698_1096

Scaffold Ga0153698_1096


Overview

Basic Information
Taxon OID3300011335 Open in IMG/M
Scaffold IDGa0153698_1096 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)36551
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (55.00%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Associated Families17

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHwacheon, Gangwon-do, South Korea
CoordinatesLat. (o)38.0874861Long. (o)127.761456Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003049Metagenome510Y
F005584Metagenome395Y
F005702Metagenome392Y
F006138Metagenome / Metatranscriptome380Y
F008741Metagenome328Y
F008938Metagenome325Y
F012113Metagenome / Metatranscriptome283Y
F026543Metagenome197N
F030060Metagenome186N
F035669Metagenome171Y
F048161Metagenome148N
F049401Metagenome146N
F055438Metagenome138N
F060551Metagenome132N
F074409Metagenome119N
F079581Metagenome115N
F098683Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0153698_109616F005702N/AVAQDEDSLVIFGLGIFFGLLILQGVKLLAKHIDQQNYERRNFYLWVAAELDKMDKIVAEGNRPKEESIPSNNWAGRN*
Ga0153698_109617F074409N/AMKSPLPARPVACARNVYGDEYADYIHQPKANGWRFLFDQATGLVMNRHGVKAKNSELVLERLKGIEIKARYIDGEIMGMRTRTAKGTIILIDAFDPSNPKPIAERLKLIEEIEPASYEVKANALLRMPRLDHHKLKDCWAEMDYQNQKAGEVLWEGFVSKDDQKYPWISNPSYCSPEWHKMRIRW*
Ga0153698_109627F049401GAGGLQELLESFSGGLKIVLRLGLKEMMQKLNIAVGLGMLTLILGGGLALSSCASTNYTYTAPSPADIPALIMEWDKLERSLGLVRPEFREQYAKALKALSNAIAEQERWRARAENK*
Ga0153698_109628F012113N/AMQQILSFVQSQDVFAWVGALVALLSAVIAVASLIPGDEPEATLTKIVSFLSKFSKK*
Ga0153698_10963F060551GGCGGMKAEGQDPADSIRASYTPDMAETIDTLEDQMRERLAQMQAMNPALGLDQLAKMLTQIVEETISSQTDNPTLKNKRDDTLDEAILATMSNRSPESLTSLAARFENPATGKPYTRAALSARISKFTKRTGLTLRIQRTERVREIYKERAKRIHERRRKECPKWNKDAFAKGIKKGGKKR*
Ga0153698_109631F035669N/AMRENQLNELAGASRLGLSFFNRLIRRIECTKPVAGTGINITQEDSGFKISSSGIVGTDGFSEITLNVCSNGTPDTIIVLGK*
Ga0153698_109636F026543N/AMEGIAYWGTTNIKVASAVAGAGGKLRRLDPVSRTIKENGESQVTFWFEAGGKGAEVRAEMECPWSEMKCPEESPIRYVRAALENRDTLLGLVKRCTPVRIIERGGQTLLVSENATSDQKRAMLRHL*
Ga0153698_109637F006138GAGMPAATIGTAGLVFGLTAEAGIGLVQSFSEARSVEKNEVRSNSGDIVAVGYFNPTTAYSLSVAITGTYNVTAGAALSALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVT*
Ga0153698_109642F079581GAGMNQTPQFNVEDAIGDLLAGISGLNVYTTNRTGLRLFPFVTISASVNSQMLGNYTGVYDLSVAVNYSDTAAKISQEDFDSEYCAIFEAFYSETPTLATKIQNTILDTKIHMARISSQSPSIRANKRAWQRGLTISVICTPSEVEDGIRYLDFSEALNSMYIGVI*
Ga0153698_109644F005584AGGMAGSIDTTYFLSDLSGMIKDLYSSVTGLGSNAVCASVTDLTTATDLDIGGEILRITQSLVVPASSISAPTIGMLCSVSGTERMVAGFSQSTDGVSYTIELADITT*
Ga0153698_109645F008741GGAMSAKTIKYSQRLGDVLRCLPAAKFLADQGHEVFFDCLPQYHSVFDLVSYVKAGSKGDIIDLEIWPNKYEEYRKSKKTWTDFVYSHAEIKGADKTNIVLDKLDEKPSKELPEKYNLVAPFGISQGYYNNPLEIITKARAEMGKENFYVMTPPDIKIQGLSTYTAPNIEDMAKAIRGADMFWAINSTPIILASAVRKEKNTGFFPQKNEWEADNIFDFEGMIKLD*
Ga0153698_109647F030060GGCGGMTKGAIDSEAPQIHWEHLNAKGGRVLDLGCGFWTEAERQEGNGTAKYFLSQKPELYIGIDTNQGDIESLAKQYPESKFLCQRIESSEQIQGLIKENLITHIKCDIEGEESRMLQIADVGTLKEIAIELHYSDLWLKEFIAWFESIGFECYRYDSVSFCSEISVIYGRLKC*
Ga0153698_109649F003049GGAMKSAKQIIGCRKAKKGESTKGLGIITFGKSRPCKNKFVNVDITYDEKAKKELYEAGMLALKQDPEAVIEYVIKKALVEMAKCKK*
Ga0153698_10965F055438N/AMSEPFISSSVKAKTIIGERYKAEELESLMATTKRQDKIELLRDAVKTLIVNGIPTRTIAETLNKSQGAIQYHARYLSENGEIKKPKRTSQWRDAIK*
Ga0153698_109658F048161GAGGMILALKIAVGIVLAVVILNVAFWGFIILTYLIVTLFECIGKWINK*
Ga0153698_109659F008938N/AMITQKELREKWGIDKGQLSRMVKRGMPLTSESDAQRWRLANQTRVSTFSPTLPKSLPSSEPQKELDASSFRLVNSLGRLERSKKIEVAAYDLVVKAKNAENPVAMRSAINGWGEAKKRVSEAEMEHARYEETTRQTIRMDEVREFITTWFGAIRNLMDAMPSSLSARANPSDPECAKVAIQEGVDQIFITIQKAEGEFK*
Ga0153698_10968F098683N/AMNAMLTAHLALPAAIHRIKMLEERMAGQDAQITQLAGMIAKAKEDGGQIDKLASMMGEIARTIPLKPITHQIEGGDSLLQIPRELLPRIKKSKTGSNRKYEVVKKRWALWKTQLAAGANINEMARAWNCHRSSIKYASRHDFVASNGNPILRKMSLTRKRKKGMFV*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.