Scaffold Ga0153698_1096

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1096
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 36551
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (55.00%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Associated Families: 17

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F005702	Metagenome	392	Y
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F008938	Metagenome	325	Y
F012113	Metagenome / Metatranscriptome	283	Y
F026543	Metagenome	197	N
F030060	Metagenome	186	N
F035669	Metagenome	171	Y
F048161	Metagenome	148	N
F049401	Metagenome	146	N
F055438	Metagenome	138	N
F060551	Metagenome	132	N
F074409	Metagenome	119	N
F079581	Metagenome	115	N
F098683	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_109616	F005702	N/A	VAQDEDSLVIFGLGIFFGLLILQGVKLLAKHIDQQNYERRNFYLWVAAELDKMDKIVAEGNRPKEESIPSNNWAGRN*
Ga0153698_109617	F074409	N/A	MKSPLPARPVACARNVYGDEYADYIHQPKANGWRFLFDQATGLVMNRHGVKAKNSELVLERLKGIEIKARYIDGEIMGMRTRTAKGTIILIDAFDPSNPKPIAERLKLIEEIEPASYEVKANALLRMPRLDHHKLKDCWAEMDYQNQKAGEVLWEGFVSKDDQKYPWISNPSYCSPEWHKMRIRW*
Ga0153698_109627	F049401	GAGG	LQELLESFSGGLKIVLRLGLKEMMQKLNIAVGLGMLTLILGGGLALSSCASTNYTYTAPSPADIPALIMEWDKLERSLGLVRPEFREQYAKALKALSNAIAEQERWRARAENK*
Ga0153698_109628	F012113	N/A	MQQILSFVQSQDVFAWVGALVALLSAVIAVASLIPGDEPEATLTKIVSFLSKFSKK*
Ga0153698_10963	F060551	GGCGG	MKAEGQDPADSIRASYTPDMAETIDTLEDQMRERLAQMQAMNPALGLDQLAKMLTQIVEETISSQTDNPTLKNKRDDTLDEAILATMSNRSPESLTSLAARFENPATGKPYTRAALSARISKFTKRTGLTLRIQRTERVREIYKERAKRIHERRRKECPKWNKDAFAKGIKKGGKKR*
Ga0153698_109631	F035669	N/A	MRENQLNELAGASRLGLSFFNRLIRRIECTKPVAGTGINITQEDSGFKISSSGIVGTDGFSEITLNVCSNGTPDTIIVLGK*
Ga0153698_109636	F026543	N/A	MEGIAYWGTTNIKVASAVAGAGGKLRRLDPVSRTIKENGESQVTFWFEAGGKGAEVRAEMECPWSEMKCPEESPIRYVRAALENRDTLLGLVKRCTPVRIIERGGQTLLVSENATSDQKRAMLRHL*
Ga0153698_109637	F006138	GAG	MPAATIGTAGLVFGLTAEAGIGLVQSFSEARSVEKNEVRSNSGDIVAVGYFNPTTAYSLSVAITGTYNVTAGAALSALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVT*
Ga0153698_109642	F079581	GAG	MNQTPQFNVEDAIGDLLAGISGLNVYTTNRTGLRLFPFVTISASVNSQMLGNYTGVYDLSVAVNYSDTAAKISQEDFDSEYCAIFEAFYSETPTLATKIQNTILDTKIHMARISSQSPSIRANKRAWQRGLTISVICTPSEVEDGIRYLDFSEALNSMYIGVI*
Ga0153698_109644	F005584	AGG	MAGSIDTTYFLSDLSGMIKDLYSSVTGLGSNAVCASVTDLTTATDLDIGGEILRITQSLVVPASSISAPTIGMLCSVSGTERMVAGFSQSTDGVSYTIELADITT*
Ga0153698_109645	F008741	GGA	MSAKTIKYSQRLGDVLRCLPAAKFLADQGHEVFFDCLPQYHSVFDLVSYVKAGSKGDIIDLEIWPNKYEEYRKSKKTWTDFVYSHAEIKGADKTNIVLDKLDEKPSKELPEKYNLVAPFGISQGYYNNPLEIITKARAEMGKENFYVMTPPDIKIQGLSTYTAPNIEDMAKAIRGADMFWAINSTPIILASAVRKEKNTGFFPQKNEWEADNIFDFEGMIKLD*
Ga0153698_109647	F030060	GGCGG	MTKGAIDSEAPQIHWEHLNAKGGRVLDLGCGFWTEAERQEGNGTAKYFLSQKPELYIGIDTNQGDIESLAKQYPESKFLCQRIESSEQIQGLIKENLITHIKCDIEGEESRMLQIADVGTLKEIAIELHYSDLWLKEFIAWFESIGFECYRYDSVSFCSEISVIYGRLKC*
Ga0153698_109649	F003049	GGA	MKSAKQIIGCRKAKKGESTKGLGIITFGKSRPCKNKFVNVDITYDEKAKKELYEAGMLALKQDPEAVIEYVIKKALVEMAKCKK*
Ga0153698_10965	F055438	N/A	MSEPFISSSVKAKTIIGERYKAEELESLMATTKRQDKIELLRDAVKTLIVNGIPTRTIAETLNKSQGAIQYHARYLSENGEIKKPKRTSQWRDAIK*
Ga0153698_109658	F048161	GAGG	MILALKIAVGIVLAVVILNVAFWGFIILTYLIVTLFECIGKWINK*
Ga0153698_109659	F008938	N/A	MITQKELREKWGIDKGQLSRMVKRGMPLTSESDAQRWRLANQTRVSTFSPTLPKSLPSSEPQKELDASSFRLVNSLGRLERSKKIEVAAYDLVVKAKNAENPVAMRSAINGWGEAKKRVSEAEMEHARYEETTRQTIRMDEVREFITTWFGAIRNLMDAMPSSLSARANPSDPECAKVAIQEGVDQIFITIQKAEGEFK*
Ga0153698_10968	F098683	N/A	MNAMLTAHLALPAAIHRIKMLEERMAGQDAQITQLAGMIAKAKEDGGQIDKLASMMGEIARTIPLKPITHQIEGGDSLLQIPRELLPRIKKSKTGSNRKYEVVKKRWALWKTQLAAGANINEMARAWNCHRSSIKYASRHDFVASNGNPILRKMSLTRKRKKGMFV*