Scaffold Ga0153698_1057

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1057
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 44841
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (62.86%)
• Novel Protein Genes: 17
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Associated Families: 17

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F002149	Metagenome / Metatranscriptome	589	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F003962	Metagenome / Metatranscriptome	459	Y
F004010	Metagenome / Metatranscriptome	457	Y
F004760	Metagenome / Metatranscriptome	424	N
F007467	Metagenome / Metatranscriptome	350	Y
F010603	Metagenome / Metatranscriptome	301	Y
F014487	Metagenome / Metatranscriptome	262	Y
F014827	Metagenome / Metatranscriptome	259	Y
F020665	Metagenome / Metatranscriptome	222	Y
F020886	Metagenome / Metatranscriptome	221	N
F021063	Metagenome / Metatranscriptome	220	N
F035218	Metagenome / Metatranscriptome	172	Y
F074558	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_105710	F014827	N/A	VLRAILEIIAAVFRIIPGWKEKRTQNLEGDWRKNRDAIDGDLRGESWWLRNNDTSNKHDGGS*
Ga0153698_105719	F003962	AGAAGG	LNHDREQLKVAHKFIGLLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEVQWNSLTEQVKRLSGFFESHQKALQSLQDACPDVWDNDEVDDES*
Ga0153698_10572	F010603	AGGAG	MANEFQRSPIKAKNKSVRIDGSNFANVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHT*
Ga0153698_105726	F002826	AGG	MLVESKARLKWGRDILLTARDKLAVERDRASHGHAIDIIRIIAMVDAVALIAKEILEEE*
Ga0153698_105727	F004010	N/A	MSELAADNRKKGAARGAGGTPRPRKQMIAIALSAAGKSKPRKFRMRSGS*
Ga0153698_10573	F004760	AGGA	MPIYQYEDTRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFRSQYTPDSIKRAAIRRK*
Ga0153698_105730	F020665	AGGA	MRKKTRDIKLVKVEEFKTAKIVVEVDDELFEAMAQAGRKHIAKDKVACFSYALNKALLELWEEVK*
Ga0153698_105731	F021063	N/A	LQQLAGEVALQAIRDLRLLRKRGMVKGMKIVKDHQGVPLNDALEYKSSHEVQKLLRDFKNGTVSWWCRASGVRIDNRTLLRKLNENDYALPT*
Ga0153698_105732	F003304	N/A	MKQALVTQSFGDDWKKIIDLTRPRMEAYCKRHSVDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLMTTDCPNLGDDAGVFCAFDEGAFLDRKPEMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGVLSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVEAHFGLDRYKDAMIIHYAGQSNDLVKLAGQIQADDAKLVGLGR*
Ga0153698_105738	F007467	N/A	MKDKEAWDKFEDGLQDAKSFDEAIAWVKANQEIVEKLTIRAMINKFNRDISHANKTWRN*
Ga0153698_105743	F074558	AGGA	MDRVSYGPLTLFESDAYKQAKAMKAEKESLELEKLRLDMAEKYKEREMNSPSGRATMAADIAATLEQDKQKEMGIPLSEQMGSRMVEKGGPSILEATKMQGELDVEARVKQAKRDAMMNFAAGEKSLLPTASVDVGGVKQTVLAPQVGKTTADINEQIFQAQVPQLTKAYIAQGYDPDTAVKMAGSDVTKNLFKAQSSGKVVLTSNDGMSTISYTNEQAQKMWQDPSTPKFIKTQLNNFFGESEQPAAANWIKTRLGR*
Ga0153698_105746	F002149	N/A	MTAIEYIEQSSVPEAMWPNLAQWYGWFEGQGMVGIVEDRDGIAGVALARCIKDGQEPNHYVHSEDGENVFVDLTISSKGAKSLNCLLLLLWQRFGPRKRITFNRSGKPRSYDYMTFMRKVRV*
Ga0153698_105748	F000635	AGG	MTLTEIAQYAGEKIGKTDADTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSVAYNDAEVDPIDLATIVSQDPGLLDDARTGDPDTYHFTGRNSSGVAELNLYPRLATSGTIPLRVVEKLKCLTRTNIIVDFPPSQAALDDELRLPHVHHLVLALTHSDALERERQYAKAQAITQTANSDLAAMANYELSQVGGIKQITPQSLGELTIEEMFSA*
Ga0153698_105754	F020886	GGAGG	VSLDEISDLKDRIATQSERLARMEERQMTLISMIERSLAFHGDVANRLGALEHLRTKVLAVAGLIGLACSMAWDVLKNRLSN*
Ga0153698_105756	F014487	N/A	MPLLLIALLFCSCSPKQEDNNILPRYSEMGAAADAGAVSSGNVK*
Ga0153698_105757	F035218	N/A	MKMYRVGLAGSYAKVTGTGGVGSVGNTGGFNINVNAGSSASGTSKIGYFDPTAAFMTGSANKIDYSKRIRFSIGGMMYIGSTNSVIRIVFGGTGNATDAPLAGVDGLTIKGFGVEFALQSGFVQARLIGYNASYLTPTAYTTLTNGFATSATDNRFFGLVIESDGAGNIYLYGADSSTNPNINIGQTPLLTLAGGPTNDTSTNRFGPEVHCSNSSSSPTASPSAIIQSTHWLLDVQ*
Ga0153698_105765	F001459	N/A	MRKLKAALAFIRDQEWVNEPKWEDEDEKAWTGFLSTPTGQKLSLILLNLTLRQNASAVMKKAEELADACGHARGYRACVATLESLASQKLNSAIPGYGDGSDEPVAD*