Scaffold Ga0153697_1588

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1588
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10249
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014846	Metagenome / Metatranscriptome	259	Y
F018002	Metagenome / Metatranscriptome	237	N
F097113	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_158813	F014846	N/A	MYLDVTGQATYGIAICGRCSRKFLLAELSPDPNSPGLMVCKEDLDDYDPYRLAPRAPDQIVLPFTRPDTSINTHPAGLIQEAGDLFIVTEDGDEYLEI*
Ga0153697_158819	F097113	N/A	STATGLSNTQIGVIEATSGQFQLTGFAGEINDSITDAYNVVIVRINEHIYKAAVNSI*
Ga0153697_15888	F018002	N/A	MNLETQFSSHEAVCAERYAQINARLKRLEGVIMKTAGVLIVSMSAIVYASLTLHR*