Scaffold Ga0153697_1368

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1368
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14362
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002420	Metagenome / Metatranscriptome	560	Y
F008303	Metagenome / Metatranscriptome	335	Y
F028085	Metagenome	192	Y
F057982	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_136815	F008303	GGAG	MIDRLILSAVLGTVGFNGLYPDPPPPLTLKQKAKERSISNMCDRKPKSKTAKDLCKRWKEQQNG*
Ga0153697_136817	F002420	AGGAG	MTFRETTVKYIKDILRPKTIYEVIDTELQEAYLRKLEAETAAEYADAAIKYNSRRIERLKQRLFEHAEDET*
Ga0153697_136821	F057982	GGAGG	MTEFKYRITYNNGNFADWDSMQKELAWAYKWGIFLYAIRLNIGAWRGGHKSFKYWLYVLRREPKITRERT*
Ga0153697_136822	F028085	GGAG	MIEVITIILVTATILALGASLFVIVCAMIGWMIYTTQNGGDDD*