Scaffold Ga0153697_1337

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1337
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15041
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F050906	Metagenome / Metatranscriptome	144	N
F076869	Metagenome / Metatranscriptome	117	N
F098653	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_133713	F076869	N/A	MITQFMITEITKLVTSAQKQNVFLTQEYIDALYELDIQDIVMLRESYIAEKLVSA*
Ga0153697_133717	F098653	N/A	MCNTITSVLGFDLDAEITDNEGNVIPSGTKCNYIPEEKPDYVFNIDYYNKWTNFNEGLLNKIRDYKKYNM*
Ga0153697_133720	F000716	N/A	MEKLKQSIKEYQTSSKTYIKYDTDGYNQYQNYLYKRALHGLSAMTEKELATMCSKKKQRIINVYKRAQVVINKLKQQATISYSNFLFKSLFPNSPITEFLLTETETDESIINTLNFKDLNINKSDIITIFMSEGILPKNFLSLEGPQVSMIQLPRLKNE*
Ga0153697_13374	F050906	N/A	MNYLIMLFILSIACLLWIIGNSFRGPLYNSVKDSYELDPEGDITGSYFIIAALLLIFIAGTLI*