Basic Information | |
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Taxon OID | 3300011334 Open in IMG/M |
Scaffold ID | Ga0153697_1337 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 15041 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (12.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Daesunglee, Gyeonggi-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.6746111 | Long. (o) | 127.3841278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000716 | Metagenome / Metatranscriptome | 923 | Y |
F050906 | Metagenome / Metatranscriptome | 144 | N |
F076869 | Metagenome / Metatranscriptome | 117 | N |
F098653 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0153697_133713 | F076869 | N/A | MITQFMITEITKLVTSAQKQNVFLTQEYIDALYELDIQDIVMLRESYIAEKLVSA* |
Ga0153697_133717 | F098653 | N/A | MCNTITSVLGFDLDAEITDNEGNVIPSGTKCNYIPEEKPDYVFNIDYYNKWTNFNEGLLNKIRDYKKYNM* |
Ga0153697_133720 | F000716 | N/A | MEKLKQSIKEYQTSSKTYIKYDTDGYNQYQNYLYKRALHGLSAMTEKELATMCSKKKQRIINVYKRAQVVINKLKQQATISYSNFLFKSLFPNSPITEFLLTETETDESIINTLNFKDLNINKSDIITIFMSEGILPKNFLSLEGPQVSMIQLPRLKNE* |
Ga0153697_13374 | F050906 | N/A | MNYLIMLFILSIACLLWIIGNSFRGPLYNSVKDSYELDPEGDITGSYFIIAALLLIFIAGTLI* |
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