Scaffold Ga0153697_1135

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1135
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 26026
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (17.95%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F027518	Metagenome / Metatranscriptome	194	N
F028175	Metagenome / Metatranscriptome	192	Y
F041764	Metagenome / Metatranscriptome	159	N
F046371	Metagenome / Metatranscriptome	151	N
F049635	Metagenome / Metatranscriptome	146	N
F063704	Metagenome / Metatranscriptome	129	Y
F071250	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_113511	F041764	GAG	MNIEAGGFLKVELFNDDANLFLLALTKITKEQGAMGFKTYGLNEDEMKVLNTILETLG*
Ga0153697_113515	F028175	N/A	MAITINEQPYQYTPIGQRLMIVCSSTNVANAGFRYVFDFGSFQVNVQPNAANKGILDLAPIFREQLRHDAGTASESNIAIENTSVAFISCTIKEGWLVDGIFTVSGSGMADIDDVYAFLAEYQISDGYKPDPNVRYAMDGTSKYLMSERTKDTHKWNEAAARGLSSDWVYIPTRLADFGQLYSISNNGLLVDNVANNLYLTTYDNNDEIIDATNYTIPNEDLNSVSRLGAYPANLINDGVDFTNVKYYTIQAGEEIAFPIYTPASRVYCFYLIADDCRFNNVRLGWSNTVGGVDYFNFTKKSELSYNYERKQYQKVVGDYNASTFGFNTYDRGTTDRYVNTTKGLQINSDWVSVGEFNLLQTLCRSNDVFIINDDGTMTPVLVDAQNFVIKDERYSKLYNVTLNLKYSQPVGL*
Ga0153697_113517	F063704	N/A	MITENGYIETLNEQEAIEWGNYTIVTEEVTDQVTDEVING*
Ga0153697_11352	F027518	N/A	MNTENEIALIHEELQELNKKIDRIYHVLIGDDEMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVVGGLIVQFILKFL*
Ga0153697_113520	F046371	N/A	MSDNKLNFLKSQISAFNPTWTKEQVEMEAIRIYKEANTIDDDDEGCLYCGS*
Ga0153697_113531	F071250	N/A	MKKLISLERRIENLLKKYKTLRNNNKALCVRVWEQQFDERKDITSNFFAMYESGKYVSADNITRIARLVKERNPELRGTNHDDNKKKAQLIKPLLKK*
Ga0153697_113532	F049635	N/A	MNKEIYKTPFGRLVKINFKTLNNFKNVLRISDPTARLYVAHPERMRIKDFNNICLHTGLSREEVFSTFTPTKLINEEND*
Ga0153697_113538	F012871	AGG	MYGIALPEAQLLQMLHEFIVKHFRWVTFEHFNLAFEMNAANELSKKCEHFGALSVSFIGDVLTCYKPHRDKANLQIQREIAEAIEEKSQQIKENEMAVNDDSWRRMLQEDVESFKQSKYTTLELRGVSMMRWLEESKRITAETFTDDEYKLCKAKARKTVFNEQQLSKGMVERMSDRKRQLVKESIQFEGLRELYKLYLSKQ*