Scaffold Ga0153697_1101

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1101
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 28958
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y
F049637	Metagenome / Metatranscriptome	146	N
F093880	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_110118	F093880	N/A	MEKKTLKDLNDLNRDIWGMIVLAVETKNWALIELNLKRLNALQKRYINIINLQDYEIKGITLIAQEEARVNNLLEKQWLKDVCKRQGNYQEMKERIDKFFVE*
Ga0153697_110132	F036704	N/A	MWIEIDVMLSGSTMDWKELGLDVKHEFVRRMVRVNDVAYVQELVHDIQVIFFYDNTSCLIRGTYPEIRDELIHLSQEDDLND*
Ga0153697_110139	F049637	N/A	MNLLKSDELGVPSTFLAMFANVTTIAGLQFVNVVFTSIISILSIVYLGYKIRHEIKRNQDNGKG*
Ga0153697_110140	F029443	N/A	MTLSNLISKLKAIQEDHPMIRTFGEGDIYDYTDNGGEIVYPVFWVVVRPSQYSNMSMRYRLVLLFADLLTEDKSNRLQIQSDQLLVALDVLAKLKLDNEYNFNTQPQASVEFFQERFDDFTAGVSIEIEITSPMPLNLCQVPTI*