Scaffold Ga0153697_1042

Overview

Basic Information

• Taxon OID: 3300011334
• Scaffold ID: Ga0153697_1042
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 39022
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (26.32%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (21.43%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Daesunglee, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6746111
  • Long. (^o): 127.3841278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006936	Metagenome / Metatranscriptome	361	N
F008495	Metagenome / Metatranscriptome	332	N
F009267	Metagenome / Metatranscriptome	320	N
F011668	Metagenome / Metatranscriptome	288	Y
F014504	Metagenome / Metatranscriptome	262	N
F018136	Metagenome / Metatranscriptome	236	N
F020694	Metagenome / Metatranscriptome	222	N
F028456	Metagenome	191	N
F034182	Metagenome / Metatranscriptome	175	Y
F034928	Metagenome / Metatranscriptome	173	Y
F035667	Metagenome	171	N
F044972	Metagenome / Metatranscriptome	153	N
F046247	Metagenome / Metatranscriptome	151	N
F048162	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153697_104215	F048162	N/A	LKKKRQPTVESERAEALAEAKRILSEHYDCGLTIVSWEQGGETHHGEFVFGNKYAVEGLAGDSFSILFPDLEEEEEEDEA*
Ga0153697_104217	F011668	AGGA	MSAKTIALWMIVLSFAFLGMAFLTSCAGFNNPAVCVKTDYGTFCYELPEIPSLKK*
Ga0153697_104219	F034182	N/A	MESHTFHSLVGTSAPAAAVLISFSEVEAWLRILSLLMGICIGAVSLYKMTKSKK*
Ga0153697_104227	F035667	GAG	MEELPFAAGLQLLHADDYANGRHSAWANNNSRVDVDALATIEQTLAKHGKIQIRESEI*
Ga0153697_104228	F009267	N/A	MKKTQNTDLVKDDEILRIQAMEDGPKKVNGRILRPITALTISWMQRNEVFSGDMDPVWKAAAFTFLHSEPMSTIRGAVNDRDTFINAVDSWIEKNMRHHHETGAMSEAMGAAFDLYNSASPASEAGEGSGSPN*
Ga0153697_104230	F044972	N/A	MPATVITSSVASGVEFGLLQETGLLLNSFSRSVQSDKATVMDALGDTVAVAYFNKTATISLDGVVNGGVAYELANILTLANDTTSYGVSGGAVIVDSVSEKTGAGTFKTITVSATQYPEIV*
Ga0153697_104231	F018136	N/A	MQSALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCISHDITGLKTKLNAVRPQYAFVFGILRDGPVSISTNERHFERSVTITVHAALFAS*
Ga0153697_104232	F046247	N/A	MIIQPNEDGWAFDESTAWKLVYDGSTIIFFDETEKAISTQSMLFVGTKDECGAEIARLGLVDVTAQENDNGLDLHADAGEGAD*
Ga0153697_104235	F020694	N/A	VGLLDIFTNDLSAIMNELPLAVTFGERNFLANRTTYRRDNSLADGGFMDSASMTITAIYDAFVQTISLGDVLIIGGRRFRVTSAELSQDAVSVDFTLEDINK*
Ga0153697_104236	F008495	AGG	MFECLPEYHGLFEMVDYCKPLYPQNDHSGFHRIINLQIWPDLHEDFCASPLGWSDYVYGLFPEGKDIDRQIVLNSPAIVTPPELKSWVLCFPTGYSQDKKIDVRDVITIAHQVANGRPVLCAGKAAHGMAEFESIEYMCAYIRDALEMVTINTSTSILASALRKSWVHIADSPKHDFAHPNQRRVERKF*
Ga0153697_104253	F028456	N/A	MNKKSKVVKISHEAIGNAWGISKQAVAKWVKMGCPTSSVEDATKWRDEYLQASGKAAPATLNEARLEKTLLESERIRVRLQQDRGELVEIAVIREAGIRIGAIFSAKLAALVNDASGALAGLDEASLRKKLHERTQAILAEIRNELEKV*
Ga0153697_104255	F006936	N/A	MEQNEITALTLPVIEQEIRAAYTEANALAVTAKGNARAAVLRMADCGQMLMVAKDHVRGNRNEWLASLGIDPDKAAKAIHLARNRDQLELDLWPADMAKLGAQMLGILPPPGSSGREENDPERTTGASTHWLTYAGKLQRSFTDLFTRKPVEQWRADERESLRVSLKPIVEIYNKLI*
Ga0153697_104256	F014504	N/A	MPNNFTGVFTWMFGRPIKKPLFFLVGAAAKRPLFRDKKQETICNTKNIWQTRYSMHDQARDAAEYDEASYMPDFYSFDDPTAGHAFRMTAYREASEKLLVVLNKTISFMAEHGYSRSKTLWAVAFALGHPLTAGMSMLEAGRELGCTKQAISKIAMDFLDTTGLPPSTSLKSEEARNTYRKTNTNKYGTKRNNGTHAASH*
Ga0153697_10426	F034928	N/A	MQWRGYPLRCWPNHQDDCYRWDWEIQIDGKWVEVVTQATRWIEEEAEETLRHYLTRLKS*