Basic Information | |
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Taxon OID | 3300011334 Open in IMG/M |
Scaffold ID | Ga0153697_1022 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Daesung |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 52608 |
Total Scaffold Genes | 87 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 70 (80.46%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Daesunglee, Gyeonggi-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.6746111 | Long. (o) | 127.3841278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004432 | Metagenome / Metatranscriptome | 438 | Y |
F016519 | Metagenome / Metatranscriptome | 246 | N |
F041756 | Metagenome | 159 | N |
F051078 | Metagenome / Metatranscriptome | 144 | N |
F056333 | Metagenome | 137 | N |
F066529 | Metagenome | 126 | Y |
F085678 | Metagenome | 111 | Y |
F091938 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0153697_102251 | F056333 | AGGAG | MTELNREEIEAVVAQELEFLLRWESSLPEPSQDVELIKAVMRVLQEFKVMKKDDK* |
Ga0153697_102255 | F041756 | AGGAG | MKLHELEDLIMAAWITKEDIDSILWVLMDREKHPTEDELANLLIGLHSLHDARMTKLFNGYEQVLKTNKVIYKGYDILKNTPTL* |
Ga0153697_102262 | F051078 | AGGA | MDSSTNLKPNDIALILRPTIVDGKYTNNFQVLVSGFGPLTISEDAVNNLIGMATILASVIPHMEEDEALANKLVEYCGKMFGDVGDFFYNADHDSFGDGNFTIDTKTIGGIQ* |
Ga0153697_102267 | F085678 | AGGA | MNVEMIQEHEDGSATFTFDLTNEERDILLSLGIMTAIKNGIKEGKQYVGNTDLGYTQCGTPDSVHGEGEQP* |
Ga0153697_102271 | F091938 | N/A | MIVVDFRQGIGLDIEYNDTICHIIDDGGTHDKLFSYSGILIKLPFISIYIGEFDEIGELIKGNKPTGE* |
Ga0153697_102273 | F016519 | N/A | MATKRFDKELHDTYDKFGRDIVKSYVSSFWDMEARDNPDRYGIDLHLYKDNLLVGYAEVEVRLSWKTVEFPYEDLNVPNRKKKLLTQDMLTYFFSVNKDGTALFHCEAAAVLASEVKESRNKYVYQGELFYKVPLDRLSYVVLPTTSEATLS* |
Ga0153697_102282 | F004432 | N/A | MVTKKTPVKTPAKVAPVKSRTPKPKTEQTINVSVAAPVPVAKTETKKDDSTLGKVIGLIEWVDNPFKLFTVILLSFLAFAGYFAWDSRQVILQAITNQDKMPQLVKQEELIVPARSLLKDVDGLVLLVHKANLSTNSRTTVLALNADGSREKTMEGTVTSLFNASADRNAAMVAMLNNEILCEEFNPSSKVGEWGAKQGVKFMCRGSIPPDLGKFAGYIAIGFKEKPEDIAALKTRINLAATDMSEE* |
Ga0153697_102283 | F066529 | GGA | MIDKITLFPIVDATGYPQKTDGTQRRIEKHQEEYRAVLKAAKAEQKLDDLLFELYCKKAEQQEIRLEMFTNRKLDVYV* |
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