Scaffold Ga0126317_10731872

Overview

Basic Information

• Taxon OID: 3300011332
• Scaffold ID: Ga0126317_10731872
• Source Dataset Name: Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 936
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location

• Location Name: Stunt Ranch Reserve, CA
• Coordinates
  • Lat. (^o): 34.0938
  • Long. (^o): -118.6572
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015676	Metagenome / Metatranscriptome	253	Y
F073291	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126317_107318721	F015676	N/A	MTQQSGRSGYKPDQRNGATEQAIERTRELAEEAMDRADEWLKPTGLSIKERPMTVLAVVGGLAFAAGAAFWMLKSSRQQSRYDQVLATLSDLPRRAGWR*
Ga0126317_107318723	F073291	AGGA	VFAGLINQAKSAASHLVLKYVERASVAVPFVIAAGFALAAITVMLVERFGHVMAYWCVAGGLALIGVIASIVVSIR