Scaffold Ga0138349_1081302

Overview

Basic Information

• Taxon OID: 3300011312
• Scaffold ID: Ga0138349_1081302
• Source Dataset Name: Marine microbial communities from the Deep Pacific Ocean - MP2100 (Metagenome Metatranscriptome) (version 2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 529
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 14.317
  • Long. (^o): -118.4642

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005091	Metagenome / Metatranscriptome	412	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138349_10813021	F005091	N/A	LAFVASADAFALRAHSGMGQEPNTNCGKGFESLVKGSQDYYTTAMVKLYTHPWHTMDNATFEREAECWFANMCTTKCGGLEPVADRKADLAKKCTSTDFDWLKIWKLFSEDEVKWFKKAYPTDDVKPDEGDDETPVVYSAAMDTFKIINKKELLCLTLFTIDDECVKYNHIRME*