Scaffold Ga0138371_1085595

Overview

Basic Information

• Taxon OID: 3300011306
• Scaffold ID: Ga0138371_1085595
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 DCM_B metaT (Metagenome Metatranscriptome) (version 2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2196
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED167 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): -28.2362
  • Long. (^o): -38.4949

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067700	Metagenome / Metatranscriptome	125	N
F082630	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0138371_10855951	F082630	AGAAG	MKNAIEIGFLAGAIFALSGCSVLEKATGWAYEAEVSTQVLPDGTEQSITNWVTKPNVKTGITIGGQLTPQPVGGIASQAILALLGIGAAIRGRQWKKAAVSGVEAAQELKQALNKSNAKGKLESILGNLKTQQKAAGT
Ga0138371_10855952	F067700	N/A	LGVKAMTDTWGEWLKVPLVGAIGFTVTGSTIDEWLRICIAAATLVYTIAKAGSAVIEFRRKRNEKRN*