Scaffold Ga0138369_1104887

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0138369_1104887

Scaffold Ga0138369_1104887

Overview

Basic Information
Taxon OID	3300011302 Open in IMG/M
Scaffold ID	Ga0138369_1104887 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S23 Surf_B metaT (Metagenome Metatranscriptome) (version 2)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1341
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location Name	Southern Atlantic ocean
Coordinates	Lat. (^o)	-28.2362	Long. (^o)	-38.4949	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001219	Metagenome / Metatranscriptome	744	Y
F092118	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0138369_11048871	F092118	N/A	MAWNVFSFFLNSEEAEAFIQLNTNFLETNVVNILLLLGILIYANKTSFSVGLENRQKEIIQTIENAQKDVTNASNYYYLAEKGFTQSLFW
Ga0138369_11048872	F001219	N/A	MNFPITFLLNAGGLFDFDLTFLIEAVLFITLAFVVTNVFLSPISKQLNERSEFINYTLRKATILLTFGYEKLIGCVGLLTEEIGEMNRQIKLTKDYTNASFESEVSSVQQANSQLLSKLKGDLSIKSAFVFSNITVDLVSLTDKFFVKKFKEQS*

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