Scaffold Ga0137393_10059908

Overview

Basic Information

• Taxon OID: 3300011271
• Scaffold ID: Ga0137393_10059908
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3005
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011259	Metagenome / Metatranscriptome	293	Y
F011803	Metagenome / Metatranscriptome	287	Y
F070583	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137393_100599083	F011259	N/A	MSRQEDNRVLARAGARELTIDEVDQVSAAMQAHTNVCTAIMATATATGPGDGDGCSDTDKDAHFI*
Ga0137393_100599085	F070583	AGGAG	MNDQNRVLIRKGARELDREETERVSGGLRTLTACTFDPESGGRDGDVSLGEC*
Ga0137393_100599086	F011803	AGGAG	MNDQNRILIRRGARELTPTEADLINGGFRTLSLCTSSPSPDGDQHVGELGC*