Scaffold Ga0137391_10200888

Overview

Basic Information

• Taxon OID: 3300011270
• Scaffold ID: Ga0137391_10200888
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1734
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007516	Metagenome / Metatranscriptome	349	Y
F013724	Metagenome	269	Y
F086866	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137391_102008881	F086866	N/A	LRQEDLALGARARGLRWTASTVTAIEIGRRPITAGELLLLPTLLQVPLTELVSGDQDEVADVDGVLVTMAAMDQIGHGGALTELDSVFFVTPPIVEMGATDAERKAAKSLSKATNSTIPVRELIATAQLLWEGRRLDEERDRRLKTTQGKGNLARRRGHITGLLQKELLEELTGSRAQQVAHAVRPSTRRIKEKRR*
Ga0137391_102008883	F007516	AGGAGG	MYRRINPTSRQQLPLRMLFQPLGNGTFLKACEADSFRELVAAMLDDPAYESGDFETRLLNRLRLADELVLLAGIENEPSLLIGDRDADQTINVASDERLIRSLDRLGLVSLEPTLSAGGTHT*
Ga0137391_102008884	F013724	N/A	DSRRTIEYRYFDSSLDPARLQANIKLACWITKRASTLPDSAIPTERVRLGSHAGGQVTDSGDGLLRRFADTIFVRPQDKLKLYWLFQRSAWQPARRAA*