Scaffold Ga0137391_10015528

Overview

Basic Information

• Taxon OID: 3300011270
• Scaffold ID: Ga0137391_10015528
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6191
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011415	Metagenome / Metatranscriptome	291	N
F013549	Metagenome / Metatranscriptome	270	Y
F039961	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137391_100155285	F039961	GAGG	MMRFVDQIHEAFRETVRAGSIVGVDDLPSRLRLWRAPAETRDRMWSQVLRDYIEGPRAAWATIILEAMCPDLVITIAAMPAMPPAISHDEVAQQLITELLAAALDGPAEPARWSPNRMLSTATKGTYRWLAREIRALSHSTGDLDRRVIDAAGHEIPGLLAELEARAIPSAGLIILYRQEVLGESLAEMAAKSGLSENALRLRRRRAIERIRKELAA*
Ga0137391_100155286	F011415	AGG	MRNAVLGSWTRTGLAAVVLVLILGSIAVLGATGQLSDLRYLNIPLIHPWPPAGNYQNPFNPTDRGDIVNASQAAKVKSDLVEDGQVELKAYRSSDGSLLDGADTGNRLVKLRAALVQNHAAGVSEDFTNQLTSVRVGKLADPNDASVTWCVEEVGTSRITLTNAANGQTIRQYTIRFDDKFWMVLVGGRYLITDAEVQSETIS*
Ga0137391_100155287	F013549	GGAG	MKAGRLIRSAMLGLVAVLVLPASALAEAPGNEGGTVNVGPVSKGPVVSQGSAGYDPNGITAAAATKPSGSGTTSTEPTYTYSPVPYNSIPGACPTQNNGVISNPCAGLPTSACPPGQTGYYVYDSNGNALGLICVPNPTDSLLPPTTPEIALADQASSRQPWPALTLGINPRAGLTGLPSWFWLTGSAAMPDAVASSGPLTVRVRARLAGVSWEFGDGLGFDSVGLGQSYPIQSDVQHLYQTDTYRLTNGYRVVAILRYLVTYSVNGGSWNTLGVKTRPFSQQYLVYQLQPEAVAGQ*