Scaffold Ga0151620_1000978

Overview

Basic Information

• Taxon OID: 3300011268
• Scaffold ID: Ga0151620_1000978
• Source Dataset Name: Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11040
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (35.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location

• Location Name: San Francisco Estuary Delta, California, USA
• Coordinates
  • Lat. (^o): 37.986944
  • Long. (^o): -121.523611
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002243	Metagenome / Metatranscriptome	578	Y
F004314	Metagenome / Metatranscriptome	444	Y
F068809	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_100097813	F004314	N/A	MYDDYDLDYTFSNDYGLDEDAYYEHNALDEDYARDGQDYEALAYRHYA*
Ga0151620_100097827	F002243	GGAG	MPDFPTLQSKDGTMLVGFYPVQTPYGDISQEWCMQILSWKGIDQISKKYLNRVEKAVAIRERLAYDYVVTGDNQDLPQTGNPFYGAC*
Ga0151620_10009788	F068809	GGA	MNYLTPDDLNNLIRLVEDNNQYNDDEDVEFWTDILSRLQQQYHHALYTS*