Scaffold Ga0151620_1000546

Overview

Basic Information

• Taxon OID: 3300011268
• Scaffold ID: Ga0151620_1000546
• Source Dataset Name: Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14546
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location

• Location Name: San Francisco Estuary Delta, California, USA
• Coordinates
  • Lat. (^o): 37.986944
  • Long. (^o): -121.523611
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F009883	Metagenome / Metatranscriptome	311	Y
F012452	Metagenome	280	Y
F016643	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_100054614	F016643	GAG	MSIFNPIWRVKIGGIEYTNYVLANLTATSGRTNIYEQANAGYVNLELINLDQSIIDIEINDAVTIELQDSTATFVPIFGGTVVEFDIGIAASGVVAINQSVSILALGALARLPKALTDGVLVKDYDGDQILSILTDLLINSWNEVPAALTWATYDPTTQWQNAENTGLGEIDTPGSYELANRGSSTIDVYSLVSALATSGLGYIYENALGQISYASADHRSIYLATNGYTDLSAAQAIANSLSVQTRAGDIRNEIVLKYGGNSTNEVVDSDATSIGLYGRLAQIITTTVENQVDAESQAAFYLTLRAYPQANFNQITFELTNPEIDDADRDALINIFMGLPLRINDLPLNMAAGTYLGFVEGWTWRAAYNSVSVTAILSPLAFSLQAMQWQDVPIAEQWNTISGSLIWADALVVA*
Ga0151620_10005465	F000903	N/A	MISRMEEIQCIIAAIDHCKDRDADHSSRIVRNLSWFEYVAQNAESMVSEWIVAKALGYDYTPGMTWDKEQADVGEHIEVKWSPNPHSNLWIQESDRHDRDIAVLVTGNSPKMHIVGWIPVAVCKKPRYRNASQNNWSVPQINLQPIETLMRSNYAHPAI*
Ga0151620_10005466	F000403	GGA	MSDYIEILYPQEMMARLFCNGEIVEEYKIEQCDKCSQLRKLDKFGYQKGYDSKDNIIWFCGDCR*
Ga0151620_10005467	F012452	AGAAGG	MAGFLENYEGNKDRTDRWIVTFAQGRLEAHIIEFNAEKGYVLVQAKAWRNQEEIEPAGIDYAFGYREAYNPNMKRWFVEDTVTSALMRVMALVMGGTEKATKEVMEQVKINDATKPTDYDYWTTKHGDVPSYKTAGEAEQAGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHRVWRTGTSAKTGKEWANYSCVGKKPDQCDPLWYVFTSRGKWEPQV*
Ga0151620_10005468	F009883	GGAG	MNEATIVIAMVIAGALWAVMSYSVGFKEGQRQGYTRGRAVSRHISQLNEKVDN*