Scaffold Ga0151620_1000166

Overview

Basic Information

• Taxon OID: 3300011268
• Scaffold ID: Ga0151620_1000166
• Source Dataset Name: Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25405
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (50.62%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → The Molecular Ecology Of Microcystis Sp. Blooms In The San Francisco Estuary Delta

Source Dataset Sampling Location

• Location Name: San Francisco Estuary Delta, California, USA
• Coordinates
  • Lat. (^o): 37.986944
  • Long. (^o): -121.523611
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F001968	Metagenome / Metatranscriptome	610	Y
F004314	Metagenome / Metatranscriptome	444	Y
F037598	Metagenome / Metatranscriptome	167	Y
F071779	Metagenome / Metatranscriptome	122	Y
F080645	Metagenome / Metatranscriptome	115	Y
F104550	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151620_100016620	F000345	N/A	MTKPNELGKALQEWWDSDACKEMQKANEEAKQRAIGKYFMLSEEDKVDMVQAICHIMCKAESEGTSHRGLMDALGIYPAGFWVDGLMEVHNALWSYYHDGKVKKELQDDLDALEDFIK*
Ga0151620_100016642	F000744	GGAG	MTETIVNLNVHEIGIILSALQNVELADEMHIARDYGSVPALYNKLYTLWERMDTSTTGLRYDVVPSF*
Ga0151620_100016656	F004314	N/A	MYDDYDLDYTFSNDYTLDEDTYAEFGTSDLDEDYARDGQDYESLAYRHYA*
Ga0151620_100016658	F080645	GAG	MTLTSEQVSDLLSAHCYRVIDNMDADDLFSYAMQMMMESFGGKPNQVDVDMLIEDIWVAEGEDDDATQEFIAGVIGDDLAEEIVKTTQF*
Ga0151620_100016660	F071779	GAGG	MATNYRVIGFGETEHGFFNEPAFCSSLGYAQGFFEGHKNDPEIKGAVLIKVDHETWEVIDEFGTENMSIVYGPLGTFKVDRAPKLLLNW*
Ga0151620_100016663	F104550	N/A	MQLTKSFPPADDMFMQLQQVDYRKLFNDYMDFVVTVCAFVAAIATILWEKIQVMKFQTPAFMTDYFYFSVNLIGDPGDEIVGLSVGNRYVGLYNNGIVWGVLDENGAL*
Ga0151620_100016664	F001968	GAGG	MFDEMWQEIADAPGEIFDIPELRDEEDFNLNDYLAADYDY*
Ga0151620_100016675	F037598	N/A	MTRTNVLPLDLCTVTLTEAQWSTIRTAVLCLACDCRTAGKSADADYYLKAYNTLAEAMGL