Scaffold Ga0151668_1003096

Overview

Basic Information

• Taxon OID: 3300011262
• Scaffold ID: Ga0151668_1003096
• Source Dataset Name: Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_5, total
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1456
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. 2KL-51 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.31041
  • Long. (^o): 137.23108
  • Depth (m): 11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076930	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151668_10030962	F076930	GAG	MIEKSIDEPTKRATHLGFRQGYEIANRTQIDESFGKDEFVNIVLETVINSLESTVFEAISAELELMNEKYPAFDSWKVFAAAVIQGAGENFLDRTANEE*