Scaffold Ga0151677_1003777

Overview

Basic Information

• Taxon OID: 3300011258
• Scaffold ID: Ga0151677_1003777
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3522
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017135	Metagenome	242	N
F020172	Metagenome / Metatranscriptome	225	N
F093736	Metagenome / Metatranscriptome	106	N
F093796	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151677_10037771	F093736	N/A	MAGKDHERVNLQHKAGRHTLTTGIGYSVAKDSKTAVHRNRAIRQEALREQLSQQGHEQYISEIITNLSDPELEYDSLWVQRLKAAADLRLKLMAKYIPDLKSQELTGPEGGDLVIAVQRKRFDGDD*
Ga0151677_100377710	F017135	N/A	CPLPGGGQALIKTQDIGGATTGKNPKECDVYVLGWAANGITVDLSLDDFAEMWVSALFDEGSNDIEIVFTPDELH*
Ga0151677_10037775	F020172	N/A	MFCTRNGYKHIENLDTVCELIGRLKGLTESEYLDLCAINKLENARALEMAKHYPSH*
Ga0151677_10037778	F093796	GGA	MWGYTIIGRDGGEVYTSEPEYETYEEAYNAGDHTLCDMNEGSVDVWQDL*