Scaffold Ga0151675_1022116

Overview

Basic Information

• Taxon OID: 3300011254
• Scaffold ID: Ga0151675_1022116
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3152
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 36.97018
  • Long. (^o): 137.37008

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030877	Metagenome	184	N
F033958	Metagenome	176	N
F040865	Metagenome / Metatranscriptome	161	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151675_10221161	F033958	GAGG	MEALSRKLEFNRKGQMVFTFGDNWSLSVINNGYGARDGLFEIAPMADEEIQYVEGISTELDNVRGYLTEDEVFEYVDKMAEITGYPAKHNDSSLPYW*
Ga0151675_10221166	F040865	GGAGG	MHYQLDIMAIDGPVFSGSFKSIYPMAEKIVRHLGTSFDVGSSYAVSSDGVCTANIEGCTWTDIRDVIRDMESQEESYNARASYEYWGRAIGDIDADGEPAF*
Ga0151675_10221168	F030877	GAGG	MKKLLLAASVFVLASCTASISIKAQEFNGDPGAQPLPEVAPLSPNKNKESTPNYPDTVQQTTMGCSMLHKFSEVREKWGERPLFSGLGLQLVIPPNVYGAPAKPIKRPMTLFVNQDTGTWTLVSFWTDNYACLVANGRDFVPGGSSFSDKGNL*