Scaffold Ga0151675_1000671

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0151675_1000671

Scaffold Ga0151675_1000671

Overview

Basic Information
Taxon OID	3300011254 Open in IMG/M
Scaffold ID	Ga0151675_1000671 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Toyama Prefectural University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5026
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (35.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location
Location Name	Japan Sea near Toyama Prefecture, JAPAN
Coordinates	Lat. (^o)	36.97018	Long. (^o)	137.37008	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002344	Metagenome / Metatranscriptome	568	Y
F040719	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0151675_10006711	F002344	N/A	HIKAKMKKNAEEYKSVNWLIDELKTKDNYSDLTIEQIRSICTFGDVWYYDLTQKDLIWGDWLTK*
Ga0151675_100067111	F040719	N/A	MTEKIKPIFDSFQEYMEAEDMIFKTLQGDMTVTIGSKDIE*

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