Scaffold Ga0151671_1007978

Overview

Basic Information

• Taxon OID: 3300011253
• Scaffold ID: Ga0151671_1007978
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, permeate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15174
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.04027
  • Long. (^o): 137.37583

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053312	Metagenome / Metatranscriptome	141	N
F072378	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151671_100797812	F053312	GGGGG	MSYKVLNDAVGLIRDETPLWDGSYQELPCKTKDGLIALWLITHPTWMDDVFPHTVSDKRLLALEAIYSEDATSRMAAAMFRDAAERNAKDVDNDAYLSEALNDFEAILDTPDFLEEIREQIYLYLEPSMEELVMDSFQELNHFDRLFMGSH*
Ga0151671_10079788	F072378	AGG	MENLNLSKSLEDCFEWDLNDQIIRFDSIIESLMSTDVPRSQLRDELIDWQDDVANLVDEVSALEPYEGFREFATMAEELFGTEV*