Scaffold Ga0151673_143302

Overview

Basic Information

• Taxon OID: 3300011245
• Scaffold ID: Ga0151673_143302
• Source Dataset Name: Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Toyama Prefectural University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1930
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Environmental Dna From Seawater And Marine Sediment

Source Dataset Sampling Location

• Location Name: Japan Sea near Toyama Prefecture, JAPAN
• Coordinates
  • Lat. (^o): 37.36555
  • Long. (^o): 137.72861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024584	Metagenome	205	N
F050674	Metagenome	145	N
F060351	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0151673_1433023	F050674	AGAAGG	VDRIVNPLNAIGYSDWGIKRTIREAENVSRWNPWKCHEWMEEARDRMDLDNLFHNEYDSAVRRINTYWHMLPRFRHHNPDEFWKRDKVSYPPTYLELMVDDSDW*
Ga0151673_1433024	F024584	GAGG	MYFKLVSKNGYRDLVRNARRICVSQLSEEEKSAAFVELYEILKDKLFESTRSLNVEAAYADRCIHWNQRDIDQIKTVTTTRNPWLRFKREFEQSLDGKMPSKNIEIALAWFYAAPYRDDWIAS*
Ga0151673_1433025	F060351	N/A	MTTKYDDMVWKILGGMPIEVFDEDDDTVWENETWELVKVRTEGDYKDSRAIGSANLITALNMVHQRLLVDGTISDDITSLSHDIFNNILEKFTKDKLIRKRPENIRKTFQVVD*