Scaffold Ga0136558_1103952

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136558_1103952

Scaffold Ga0136558_1103952

Overview

Basic Information
Taxon OID	3300011189 Open in IMG/M
Scaffold ID	Ga0136558_1103952 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E6 #833
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	697
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Rauer Islands
Coordinates	Lat. (^o)	-68.5558	Long. (^o)	78.1913	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F072828	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136558_11039522	F072828	AGGAG	MTTLTEFLATADTDNTIALGQARAFSEQVLKPLDERMMNERTVMGLIGMEYGEMFMQSLEAAPDNMLPTRVKAWFKPSEAGIDVATPSAVGLIDTMAGAGAITEAEAGVLKGYAYDTVTPFLRITLHSVLLTRGVCPTIAVT

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