Scaffold Ga0136596_1087975

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0136596_1087975

Scaffold Ga0136596_1087975

Overview

Basic Information
Taxon OID	3300011187 Open in IMG/M
Scaffold ID	Ga0136596_1087975 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	613
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Rauer Islands
Coordinates	Lat. (^o)	-68.5558	Long. (^o)	78.1913	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014583	Metagenome	261	N
F033324	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136596_10879752	F033324	AGGTGG	MTDTAKRMMEAAKTDALFAAAHAALPGVKRQAELLAKMRRVHYDASIAQGFTPDDALILCMNSVRV*
Ga0136596_10879753	F014583	GAGG	MTTRDTRRNFHRLLDQTWPGVRSEFVAAMRQARAGVDMRALEAAIARGDVDAAFRALRFDAADLFKTDT

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