Scaffold Ga0136596_1017867

Overview

Basic Information

• Taxon OID: 3300011187
• Scaffold ID: Ga0136596_1017867
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1787
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001408	Metagenome	702	Y
F002402	Metagenome	563	Y
F079423	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136596_10178671	F079423	N/A	INTMAEPQNTLKYAEINNLASLGQFGVRQLATGETSTTGEKFIAVYANVDSDFTVASTSGGDSSFTVTLLAGGSLVGPYKNITGLTGDILCFKSDEL*
Ga0136596_10178673	F002402	N/A	MYYRGTKEQCEDYNTKVTLGENYQGSTDNWANVTSNQNGQGFAILKHENYESEMTLIDKIPDSWYNNTEL*
Ga0136596_10178674	F001408	N/A	MKNYFKRTRHHLHAIVGITGGFLASLALSWVWLGFRNLDSIDKAILFLPLAFIIGYAWERYQGIINKMDILVSGIAISTGVYLGGLLF*