Scaffold Ga0136596_1004640

Overview

Basic Information

• Taxon OID: 3300011187
• Scaffold ID: Ga0136596_1004640
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E11 #897
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4743
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004446	Metagenome	437	Y
F093010	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136596_10046404	F093010	GGA	MQPYTHLLALARRAIPWFLVSFLLTSLAILASAQTTCGPTESVHNTLTDQYGLQLKESRDAPHVIGGVAELWINHRTGAFAVLVYPQPGVACLVQTGQSDKLISYAA*
Ga0136596_10046407	F004446	N/A	LQNFFVRGYAKKAIRLKALATLFGFRVMMWIAGKITGHLMGGLFPPTKQETPTMKTITPAPTPTTFFLRADDLRAAFQCISTEQTRYYLGGVRGVFVEADNLVAMDGHQMLTIKLPDGCHVGTECFTQDMDAPRMPGDTGIRGAGFILSCDATAKQFKAKASGGDLWVYGDIETGILQFVINHGKGGEMCRTGVLEFTRINGTYPEWRRVVAKGGGGARSVCYDPAVLGKLIKASDVIKKGKGIRLTGGEDDPIRVDFAASPRLRGTLYPLRWTGA*