Scaffold Ga0136553_1038773

Overview

Basic Information

• Taxon OID: 3300011186
• Scaffold ID: Ga0136553_1038773
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #430
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 952
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027378	Metagenome	194	N
F036509	Metagenome	169	N
F068453	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0136553_10387731	F027378	N/A	MSASYSLDTPYSSQVIFLNSQNSIYKSIDGNGIYHYNLKTPVQLPTNCKMLLSIQDAQIPNISPNVGSTNNQISFSIPTFSKFFTITVADEDGDRVY
Ga0136553_10387732	F036509	N/A	MSLHQATQKLTPQQSNVIPAGKFIYTDETFLVEQPIDPKGEAFPRQGKELIPHGFSFAHRNPDFTTVAGGVPIAQNFNTYIYNAQTGFV*
Ga0136553_10387733	F068453	N/A	SIFEMETNDKSISGSADMNVYCNGTFYKQRCMFLHMLNEATLVFKRDLHYKFASTNSNEAVPFLQQHLADIVETNIDRVMCCISHDSNTIPKTQWIKDQFKTEPLTQYERHMEIYSKCNV