Scaffold Ga0136553_1018431

Overview

Basic Information

• Taxon OID: 3300011186
• Scaffold ID: Ga0136553_1018431
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #430
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1542
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003552	Metagenome	480	Y
F018841	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136553_10184311	F003552	N/A	NNNVNLFDDGQPQLLGHINNFNVLVGGSNVLHADARYTYQSFNNEFFNEFGVNGNQSPGLGSCLIDFKSWFKKPYYYVNCSRVPVEQQNAYRSLQIKGTNSSALAMDYMIFAIYEKNFQLDVISGTINKID*
Ga0136553_10184312	F018841	N/A	MNVSLNLSPGQLSKLRNGHGIRIGPAMFGKGVDMIIDPMTFNNMMKKLERGKGAVISMSGGEIEQNKMEGTGLFAGAGRKNGKISRINKARKWRDFSDETLRKGIDTGRYGYEQFQEATNPLKSEGKKVIKGISKLFGGELDGDEMEGEGFFDDIKKGYNKKVKNSALGKALRESARSAISDGYDRGAKELGKNKYGKPISQYMRNKRGSNVDKLTGYTGLGLRMAGDGKMKTAVYRRPGKIIPLY*