Scaffold Ga0136553_1004649

Overview

Basic Information

• Taxon OID: 3300011186
• Scaffold ID: Ga0136553_1004649
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #430
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3824
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008123	Metagenome / Metatranscriptome	338	Y
F012594	Metagenome / Metatranscriptome	279	Y
F050938	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136553_10046496	F008123	AGAAG	MAEETNSSVRITNAQVYEKLIEVSNVQIEMVVELRGLKYLPSKVADIENRLSKVELIARLVYGVYGATLGAVAVGLVSLLRG*
Ga0136553_10046497	F012594	AGG	MPVVSTGVTVGTSITSVSGPFISSKVVYLQSGTEGAATYVGGSDVSASTGILLSETNNAVFQTNADDTLYCISDTVGAVVKVVEVK*
Ga0136553_10046498	F050938	AGGA	MLYINAENEYPRHIGDVQLAKPSFKDGDALPTGWVKVEESERPTAGTDKVTVEGTPEEVDGVMTQTWTVRDLTQAELDRRDAPANAKAKLIELGLTEAEVSALVQGLVR*